Information for 5-GCAGAGAACG (Motif 27)

A C T G A G T C C G T A A T C G C G T A A C T G C G T A C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A C G T A G T C A C G T A T G C A C G T A C T G A G T C
p-value:1e-5
log p-value:-1.268e+01
Information Content per bp:1.960
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.0 +/- 26.8bp
Average Position of motif in Background55.0 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCAGAGAACG--
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T C G C G T A A C T G C G T A C G T A A G T C A C T G A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCAGAGAACG-
ATTTGCATACAATGG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T C G C G T A A C T G C G T A C G T A A G T C A C T G A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCAGAGAACG-
GAAAGTGAAAGT
 A C G T A C T G A G T C C G T A A T C G C G T A A C T G C G T A C G T A A G T C A C T G A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCAGAGAACG
--AGATAASR
 A C T G A G T C C G T A A T C G C G T A A C T G C G T A C G T A A G T C A C T G
A C G T A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCAGAGAACG-
-CAGATAAGGN
 A C T G A G T C C G T A A T C G C G T A A C T G C G T A C G T A A G T C A C T G A C G T
A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

Gata4/MA0482.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAGAGAACG
NNGAGATAAGA
 A C G T A C T G A G T C C G T A A T C G C G T A A C T G C G T A C G T A A G T C A C T G
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCAGAGAACG---
GAGCACAGCAGGACA
 A C G T A C G T A C T G A G T C C G T A A T C G C G T A A C T G C G T A C G T A A G T C A C T G A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCAGAGAACG
GCAGTGATTT
 A C T G A G T C C G T A A T C G C G T A A C T G C G T A C G T A A G T C A C T G
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCAGAGAACG-
-NAGATAAGNN
 A C T G A G T C C G T A A T C G C G T A A C T G C G T A C G T A A G T C A C T G A C G T
A C G T T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCAGAGAACG----
AAACAGACAAAGGAAT
 A C G T A C G T A C T G A G T C C G T A A T C G C G T A A C T G C G T A C G T A A G T C A C T G A C G T A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T