Information for 10-AGTATGTATAATATRA (Motif 20)

C G T A C T A G C A G T C G T A A C G T C T A G A G C T G C T A A C G T C G T A G C T A C G A T C G T A A C G T C T A G C T G A
Reverse Opposite:
A G C T G A T C C G T A C G A T C G T A C G A T C G A T C G T A C A G T C T G A A G T C G T C A A C G T G T C A A G T C C G A T
p-value:1e-9
log p-value:-2.102e+01
Information Content per bp:1.696
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif32.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets45.0 +/- 25.3bp
Average Position of motif in Background48.3 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGTATGTATAATATRA
AAAATATGCATAATAAA-
 A C G T A C G T C G T A C T A G C A G T C G T A A C G T C T A G A G C T G C T A A C G T C G T A G C T A C G A T C G T A A C G T C T A G C T G A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGTATGTATAATATRA
---ATGAATATTC---
 C G T A C T A G C A G T C G T A A C G T C T A G A G C T G C T A A C G T C G T A G C T A C G A T C G T A A C G T C T A G C T G A
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGTATGTATAATATRA
---ATGCATAATTCA-
 C G T A C T A G C A G T C G T A A C G T C T A G A G C T G C T A A C G T C G T A G C T A C G A T C G T A A C G T C T A G C T G A
A C G T A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGTATGTATAATATRA
---ATGMATATDC---
 C G T A C T A G C A G T C G T A A C G T C T A G A G C T G C T A A C G T C G T A G C T A C G A T C G T A A C G T C T A G C T G A
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGTATGTATAATATRA
-NNNTTTNTAATACNG
 C G T A C T A G C A G T C G T A A C G T C T A G A G C T G C T A A C G T C G T A G C T A C G A T C G T A A C G T C T A G C T G A
A C G T C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

POU4F1/MA0790.1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGTATGTATAATATRA-
---ATGAATAATTAATG
 C G T A C T A G C A G T C G T A A C G T C T A G A G C T G C T A A C G T C G T A G C T A C G A T C G T A A C G T C T A G C T G A A C G T
A C G T A C G T A C G T T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

PB0080.1_Tbp_1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGTATGTATAATATRA
NANTTATATATAANGN
 C G T A C T A G C A G T C G T A A C G T C T A G A G C T G C T A A C G T C G T A G C T A C G A T C G T A A C G T C T A G C T G A
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

ONECUT3/MA0757.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGTATGTATAATATRA
AAAAAATCAATAAT----
 A C G T A C G T C G T A C T A G C A G T C G T A A C G T C T A G A G C T G C T A A C G T C G T A G C T A C G A T C G T A A C G T C T A G C T G A
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:9
Score:0.53
Offset:7
Orientation:forward strand
Alignment:AGTATGTATAATATRA-----
-------CTAATATTGCTAAA
 C G T A C T A G C A G T C G T A A C G T C T A G A G C T G C T A A C G T C G T A G C T A C G A T C G T A A C G T C T A G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:10
Score:0.53
Offset:7
Orientation:forward strand
Alignment:AGTATGTATAATATRA-----
-------CTAATATTGCTAAA
 C G T A C T A G C A G T C G T A A C G T C T A G A G C T G C T A A C G T C G T A G C T A C G A T C G T A A C G T C T A G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A