Information for 12-CCGTTTCAAGGCA (Motif 19)

A G T C G T A C T C A G A C G T A C G T G C A T A T G C G T C A C T G A A C T G A T C G A G T C G T C A
Reverse Opposite:
C A G T A C T G A T G C G T A C G A C T A C G T A T C G C G T A C G T A T G C A A G T C A C T G A C T G
p-value:1e-9
log p-value:-2.172e+01
Information Content per bp:1.691
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif69.1
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets45.2 +/- 23.7bp
Average Position of motif in Background51.7 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CCGTTTCAAGGCA-
----NTCAAGGTCA
 A G T C G T A C T C A G A C G T A C G T G C A T A T G C G T C A C T G A A C T G A T C G A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCGTTTCAAGGCA---
-AAGTTCAAGGTCAGC
 A G T C G T A C T C A G A C G T A C G T G C A T A T G C G T C A C T G A A C T G A T C G A G T C G T C A A C G T A C G T A C G T
A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

STAT1/MA0137.3/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCGTTTCAAGGCA-
---TTTCCAGGAAA
 A G T C G T A C T C A G A C G T A C G T G C A T A T G C G T C A C T G A A C T G A T C G A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CCGTTTCAAGGCA-
----BTCAAGGTCA
 A G T C G T A C T C A G A C G T A C G T G C A T A T G C G T C A C T G A A C T G A T C G A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCGTTTCAAGGCA-
NNNCTTTCCAGGAAA
 A C G T A G T C G T A C T C A G A C G T A C G T G C A T A T G C G T C A C T G A A C T G A T C G A G T C G T C A A C G T
G A C T C G A T T C A G G A T C G A C T A G C T A G C T A G T C G A T C C G T A C T A G C T A G T C G A T C G A C T G A

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCGTTTCAAGGCA--
-NNCTTCCNGGAAGN
 A G T C G T A C T C A G A C G T A C G T G C A T A T G C G T C A C T G A A C T G A T C G A G T C G T C A A C G T A C G T
A C G T A T G C T C G A A G T C A G C T A C G T G T A C A G T C G C T A C T A G C A T G G T C A C T G A T C A G A G T C

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCGTTTCAAGGCA-
--NTTTCCNGGAAA
 A G T C G T A C T C A G A C G T A C G T G C A T A T G C G T C A C T G A A C T G A T C G A G T C G T C A A C G T
A C G T A C G T T C A G A G C T A C G T A C G T G T A C G A T C C G T A C T A G C A T G G T C A C G T A T C G A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCGTTTCAAGGCA
CGGTTTCAAA---
 A G T C G T A C T C A G A C G T A C G T G C A T A T G C G T C A C T G A A C T G A T C G A G T C G T C A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCGTTTCAAGGCA--
----TTCAAGGTCAT
 A G T C G T A C T C A G A C G T A C G T G C A T A T G C G T C A C T G A A C T G A T C G A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCGTTTCAAGGCA-
--AGGTCAAGGTCA
 A G T C G T A C T C A G A C G T A C G T G C A T A T G C G T C A C T G A A C T G A T C G A G T C G T C A A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A