Information for 6-TGTCTGGCACCGCAGA (Motif 24)

A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A G T C A C T G A G T C C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G A G T C A C T G A C T G A C G T A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A
p-value:1e-7
log p-value:-1.657e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets25.0 +/- 12.0bp
Average Position of motif in Background8.6 +/- 0.6bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGTCTGGCACCGCAGA
TGTCTGDCACCT----
 A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A G T C A C T G A G T C C G T A A C T G C G T A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGCACCGCAGA
CTGTCTGTCACCT----
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A G T C A C T G A G T C C G T A A C T G C G T A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCTGGCACCGCAGA
NNTNNTGTCTGGNNTNG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A G T C A C T G A G T C C G T A A C T G C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGCACCGCAGA
CTGTCTGG---------
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A G T C A C T G A G T C C G T A A C T G C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGTCTGGCACCGCAGA
GGTCTGGCAT------
 A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A G T C A C T G A G T C C G T A A C T G C G T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TGTCTGGCACCGCAGA
VBSYGTCTGG---------
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A G T C A C T G A G T C C G T A A C T G C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGCACCGCAGA
TWGTCTGV---------
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A G T C A C T G A G T C C G T A A C T G C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TGTCTGGCACCGCAGA
--NTTGGCANN-----
 A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A G T C A C T G A G T C C G T A A C T G C G T A
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGTCTGGCACCGCAGA
-GGTTGGCAT------
 A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A G T C A C T G A G T C C G T A A C T G C G T A
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGCACCGCAGA
ATAAATGACACCTATCA
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A G T C A C T G A G T C C G T A A C T G C G T A
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A