Information for 7-AGTGAGGCGT (Motif 18)

C G T A A C T G A C G T A C T G C G T A A C T G C T A G A G T C A C T G A C G T
Reverse Opposite:
C G T A A G T C A C T G A G T C A G T C A C G T A G T C C G T A A G T C A C G T
p-value:1e-9
log p-value:-2.132e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.2 +/- 24.0bp
Average Position of motif in Background56.4 +/- 7.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGTGAGGCGT---
AANTCATGCGTGAA
 A C G T C G T A A C T G A C G T A C T G C G T A A C T G C T A G A G T C A C T G A C G T A C G T A C G T A C G T
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGTGAGGCGT------
-CAAAGGCGTGGCCAG
 C G T A A C T G A C G T A C T G C G T A A C T G C T A G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGTGAGGCGT----
TGCAGTCATGCGTGACG
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C T G C T A G A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PB0143.1_Klf7_2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGTGAGGCGT------
NNNTNGGGCGTATNNTN
 A C G T C G T A A C T G A C G T A C T G C G T A A C T G C T A G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGTGAGGCGT----
NGCANTCATGCGTGACG
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C T G C T A G A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PROX1/MA0794.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGTGAGGCGT----
--TAAGGCGTCTTG
 C G T A A C T G A C G T A C T G C G T A A C T G C T A G A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T T C G A G T C A T C A G C T A G G T A C C T A G A G C T G A T C C G A T G A C T T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGTGAGGCGT---
SCAGYCADGCATGAC
 A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C T G C T A G A G T C A C T G A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:8
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------AGTGAGGCGT---
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C T G C T A G A G T C A C T G A C G T A C G T A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

JUND/MA0491.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGTGAGGCGT-
GGTGACTCATC
 C G T A A C T G A C G T A C T G C G T A A C T G C T A G A G T C A C T G A C G T A C G T
C T A G T C A G A C G T A C T G C G T A A T G C A C G T G T A C C G T A A G C T T A G C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AGTGAGGCGT--
----AGGCCTNG
 C G T A A C T G A C G T A C T G C G T A A C T G C T A G A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G