Information for 10-GGAGTGGCCACAAGAG (Motif 18)

C A T G A C T G C G T A C T A G A C G T A C T G A C T G G T A C A G T C C G T A A T G C G T C A C G T A A C T G C T G A A C T G
Reverse Opposite:
A G T C A G C T A G T C A C G T C A G T A T C G A C G T A C T G A C T G G T A C A G T C C G T A A G T C A C G T A G T C G T A C
p-value:1e-11
log p-value:-2.594e+01
Information Content per bp:1.860
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 28.2bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGAGTGGCCACAAGAG-------
----TGGCCACCAGGGGGCGCTA
 C A T G A C T G C G T A C T A G A C G T A C T G A C T G G T A C A G T C C G T A A T G C G T C A C G T A A C T G C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGAGTGGCCACAAGAG--------
----TGGCCACCAGGTGGCACTNT
 C A T G A C T G C G T A C T A G A C G T A C T G A C T G G T A C A G T C C G T A A T G C G T C A C G T A A C T G C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGAGTGGCCACAAGAG
TGATTGGCTANN----
 C A T G A C T G C G T A C T A G A C G T A C T G A C T G G T A C A G T C C G T A A T G C G T C A C G T A A C T G C T G A A C T G
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGAGTGGCCACAAGAG
CTTGAGTGGCT-------
 A C G T A C G T C A T G A C T G C G T A C T A G A C G T A C T G A C T G G T A C A G T C C G T A A T G C G T C A C G T A A C T G C T G A A C T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGAGTGGCCACAAGAG
TTGAGTGSTT-------
 A C G T C A T G A C T G C G T A C T A G A C G T A C T G A C T G G T A C A G T C C G T A A T G C G T C A C G T A A C T G C T G A A C T G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Klf12/MA0742.1/Jaspar

Match Rank:6
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GGAGTGGCCACAAGAG
NANAAGGGCGTGGTC-------
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G A C T G C G T A C T A G A C G T A C T G A C T G G T A C A G T C C G T A A T G C G T C A C G T A A C T G C T G A A C T G
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GGAGTGGCCACAAGAG----------
------GCCASCAGGGGGCGCYVNNG
 C A T G A C T G C G T A C T A G A C G T A C T G A C T G G T A C A G T C C G T A A T G C G T C A C G T A A C T G C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GGAGTGGCCACAAGAG
BTBRAGTGSN--------
 A C G T A C G T C A T G A C T G C G T A C T A G A C G T A C T G A C T G G T A C A G T C C G T A A T G C G T C A C G T A A C T G C T G A A C T G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GGAGTGGCCACAAGAG
MKGGGYGTGGCC-------
 A C G T A C G T A C G T C A T G A C T G C G T A C T A G A C G T A C T G A C T G G T A C A G T C C G T A A T G C G T C A C G T A A C T G C T G A A C T G
G T A C C A G T A C T G A C T G A C T G G A T C A C T G A C G T A C T G A C T G A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GGAGTGGCCACAAGAG
TTRAGTGSYK-------
 A C G T C A T G A C T G C G T A C T A G A C G T A C T G A C T G G T A C A G T C C G T A A T G C G T C A C G T A A C T G C T G A A C T G
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T