Information for 3-DCCACATGCAGAVAAD (Motif 3)

C G A T A G T C G T A C G C T A A G T C C T G A C A G T A C T G A T G C C G T A A T C G T C G A T C G A C G T A C T G A C T A G
Reverse Opposite:
G A T C A G C T A C G T A C G T A G C T A T G C A C G T A T C G A G T C G T C A A G C T A C T G C G A T A C T G A C T G G C T A
p-value:1e-16
log p-value:-3.787e+01
Information Content per bp:1.799
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.4 +/- 17.4bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-DCCACATGCAGAVAAD
GACCACATTCATACAAT
 A C G T C G A T A G T C G T A C G C T A A G T C C T G A C A G T A C T G A T G C C G T A A T C G T C G A T C G A C G T A C T G A C T A G
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:DCCACATGCAGAVAAD---
---CGAAGCACACAAAATA
 C G A T A G T C G T A C G C T A A G T C C T G A C A G T A C T G A T G C C G T A A T C G T C G A T C G A C G T A C T G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:DCCACATGCAGAVAAD--
---ATTTGCATACAATGG
 C G A T A G T C G T A C G C T A A G T C C T G A C A G T A C T G A T G C C G T A A T C G T C G A T C G A C G T A C T G A C T A G A C G T A C G T
A C G T A C G T A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:DCCACATGCAGAVAAD
---ATATGCAAATNNN
 C G A T A G T C G T A C G C T A A G T C C T G A C A G T A C T G A T G C C G T A A T C G T C G A T C G A C G T A C T G A C T A G
A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:DCCACATGCAGAVAAD-
--CAATTGCAAAAATAT
 C G A T A G T C G T A C G C T A A G T C C T G A C A G T A C T G A T G C C G T A A T C G T C G A T C G A C G T A C T G A C T A G A C G T
A C G T A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

Mycn/MA0104.3/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:DCCACATGCAGAVAAD
GCCACGTG--------
 C G A T A G T C G T A C G C T A A G T C C T G A C A G T A C T G A T G C C G T A A T C G T C G A T C G A C G T A C T G A C T A G
C T A G A T G C A G T C C G T A A G T C C T A G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-DCCACATGCAGAVAAD
AAGCACATGG-------
 A C G T C G A T A G T C G T A C G C T A A G T C C T G A C A G T A C T G A T G C C G T A A T C G T C G A T C G A C G T A C T G A C T A G
T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0111.1_Bhlhb2_2/Jaspar

Match Rank:8
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------DCCACATGCAGAVAAD
ACCGCCNTCCACGTGTANNGACA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G T C G T A C G C T A A G T C C T G A C A G T A C T G A T G C C G T A A T C G T C G A T C G A C G T A C T G A C T A G
C G T A G A T C G A T C C A T G T A G C G A T C G A C T C A G T T G A C G T A C C T G A A G T C T C A G G A C T A C T G A C G T G T C A C T G A G A C T T A C G C T G A G A T C C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:DCCACATGCAGAVAAD
---TTATGCAAAT---
 C G A T A G T C G T A C G C T A A G T C C T G A C A G T A C T G A T G C C G T A A T C G T C G A T C G A C G T A C T G A C T A G
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:DCCACATGCAGAVAAD-
TACATGTGCACATAAAA
 C G A T A G T C G T A C G C T A A G T C C T G A C A G T A C T G A T G C C G T A A T C G T C G A T C G A C G T A C T G A C T A G A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A