Information for 13-GTTTAGGACTAGA (Motif 24)

A T C G A G C T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G A T C G T A A C T G C T G A
Reverse Opposite:
A G C T A G T C A C G T C G T A A T C G A C G T G T A C A G T C A C G T C G T A G T C A T C G A A T G C
p-value:1e-9
log p-value:-2.213e+01
Information Content per bp:1.840
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.7 +/- 20.7bp
Average Position of motif in Background35.6 +/- 13.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTTTAGGACTAGA
ANNTTTTACGACNTNN
 A C G T A C G T A C G T A T C G A G C T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G A T C G T A A C T G C T G A
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

PH0076.1_Hoxd11/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GTTTAGGACTAGA
ANNATTTTACGACNTNA
 A C G T A C G T A C G T A C G T A T C G A G C T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G A T C G T A A C T G C T G A
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTTTAGGACTAGA----
-NNAGGGACAAGGGCNC
 A T C G A G C T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G A T C G T A A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTTTAGGACTAGA
NNNTTTTACGACNTTN
 A C G T A C G T A C G T A T C G A G C T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G A T C G T A A C T G C T G A
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

HOXD12/MA0873.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTTTAGGACTAGA
NTTTTACGACT---
 A C G T A T C G A G C T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G A T C G T A A C T G C T G A
C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T A C G T A C G T A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GTTTAGGACTAGA
NNNATTTTACGACNNTN
 A C G T A C G T A C G T A C G T A T C G A G C T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G A T C G T A A C T G C T G A
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0047.1_Hoxa11/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GTTTAGGACTAGA
NNGTTTTACGACTTTA
 A C G T A C G T A C G T A T C G A G C T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G A T C G T A A C T G C T G A
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTTTAGGACTAGA
NTTTTACGAC----
 A C G T A T C G A G C T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G A T C G T A A C T G C T G A
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GTTTAGGACTAGA
-----GGATTAGC
 A T C G A G C T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G A T C G T A A C T G C T G A
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GTTTAGGACTAGA
----AGGCCTAG-
 A T C G A G C T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G A T C G T A A C T G C T G A
A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T