Information for 6-GCCCTTTTAAGGG (Motif 8)

A T C G A G T C T G A C A T G C A G C T C A G T C A G T G C A T C G T A C T G A T A C G T C A G T A C G
Reverse Opposite:
A T G C A G T C A T G C G A C T C G A T C G T A G C T A G T C A T C G A T A C G A C T G T C A G T A G C
p-value:1e-19
log p-value:-4.593e+01
Information Content per bp:1.639
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.84%
Number of Background Sequences with motif205.7
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets50.7 +/- 24.4bp
Average Position of motif in Background47.2 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0184.1_Tbp_2/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCCCTTTTAAGGG---
-CCGATTTAAGCGACC
 A T C G A G T C T G A C A T G C A G C T C A G T C A G T G C A T C G T A C T G A T A C G T C A G T A C G A C G T A C G T A C G T
A C G T T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GCCCTTTTAAGGG-
--CCTTTTATAGNC
 A T C G A G T C T G A C A T G C A G C T C A G T C A G T G C A T C G T A C T G A T A C G T C A G T A C G A C G T
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCCCTTTTAAGGG
TNCCATATATGG-
 A T C G A G T C T G A C A T G C A G C T C A G T C A G T G C A T C G T A C T G A T A C G T C A G T A C G
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GCCCTTTTAAGGG-
----TTTTATKRGG
 A T C G A G T C T G A C A T G C A G C T C A G T C A G T G C A T C G T A C T G A T A C G T C A G T A C G A C G T
A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GCCCTTTTAAGGG-
----TTTTATTRGN
 A T C G A G T C T G A C A T G C A G C T C A G T C A G T G C A T C G T A C T G A T A C G T C A G T A C G A C G T
A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GCCCTTTTAAGGG-
----TTTAATTGCN
 A T C G A G T C T G A C A T G C A G C T C A G T C A G T G C A T C G T A C T G A T A C G T C A G T A C G A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

SRF/MA0083.3/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTTTAAGGG--
TGNCCATATATGGTCA
 A C G T A T C G A G T C T G A C A T G C A G C T C A G T C A G T G C A T C G T A C T G A T A C G T C A G T A C G A C G T A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

HOXC13/MA0907.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCCCTTTTAAGGG-
---NTTTTACGAGN
 A T C G A G T C T G A C A T G C A G C T C A G T C A G T G C A T C G T A C T G A T A C G T C A G T A C G A C G T
A C G T A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCCCTTTTAAGGG
--CCTTTGAWGT-
 A T C G A G T C T G A C A T G C A G C T C A G T C A G T G C A T C G T A C T G A T A C G T C A G T A C G
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCCCTTTTAAGGG
---NTTTTATTGG
 A T C G A G T C T G A C A T G C A G C T C A G T C A G T G C A T C G T A C T G A T A C G T C A G T A C G
A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G