Information for 4-GCAATTAGTCAGA (Motif 5)

C T A G A T G C G T C A C G T A A C G T A C G T C T G A A C T G A G C T A T G C C T G A C T A G C T G A
Reverse Opposite:
A G C T A G T C A G C T T A C G T C G A A G T C G A C T G T C A G T C A A C G T A C G T T A C G G A T C
p-value:1e-12
log p-value:-2.941e+01
Information Content per bp:1.740
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets34.1 +/- 27.5bp
Average Position of motif in Background58.4 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VSX1/MA0725.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCAATTAGTCAGA
NTAATTAG-----
 C T A G A T G C G T C A C G T A A C G T A C G T C T G A A C T G A G C T A T G C C T G A C T A G C T G A
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T A C G T A C G T A C G T

PDX1/MA0132.2/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCAATTAGTCAGA
GTAATTAG-----
 C T A G A T G C G T C A C G T A A C G T A C G T C T G A A C T G A G C T A T G C C T G A C T A G C T G A
T A C G G A C T T G C A G T C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCAATTAGTCAGA
-TAATTAGN----
 C T A G A T G C G T C A C G T A A C G T A C G T C T G A A C T G A G C T A T G C C T G A C T A G C T G A
A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T A C G T A C G T

VAX2/MA0723.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCAATTAGTCAGA
NTAATTAG-----
 C T A G A T G C G T C A C G T A A C G T A C G T C T G A A C T G A G C T A T G C C T G A C T A G C T G A
T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T A C G T A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCAATTAGTCAGA
GCAATTAG-----
 C T A G A T G C G T C A C G T A A C G T A C G T C T G A A C T G A G C T A T G C C T G A C T A G C T G A
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T A C G T

PH0007.1_Barx1/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCAATTAGTCAGA
AAAGTAATTAGTGAAT
 A C G T A C G T A C G T C T A G A T G C G T C A C G T A A C G T A C G T C T G A A C T G A G C T A T G C C T G A C T A G C T G A
G T C A G T C A T C G A T A C G G A C T T G C A G T C A A C G T A C G T C T G A A T C G A G C T C A T G G C T A C G T A G C A T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCAATTAGTCAGA--
NNAATTAGTCACGGT
 C T A G A T G C G T C A C G T A A C G T A C G T C T G A A C T G A G C T A T G C C T G A C T A G C T G A A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

VSX2/MA0726.1/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCAATTAGTCAGA
NTAATTAG-----
 C T A G A T G C G T C A C G T A A C G T A C G T C T G A A C T G A G C T A T G C C T G A C T A G C T G A
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T A C G T A C G T A C G T

VAX1/MA0722.1/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCAATTAGTCAGA
NTAATTAG-----
 C T A G A T G C G T C A C G T A A C G T A C G T C T G A A C T G A G C T A T G C C T G A C T A G C T G A
C T A G G A C T G T C A G C T A C A G T C A G T C T G A T C A G A C G T A C G T A C G T A C G T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTAGTCAGA
NNTAATTAGN----
 A C G T C T A G A T G C G T C A C G T A A C G T A C G T C T G A A C T G A G C T A T G C C T G A C T A G C T G A
T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T A C G T A C G T A C G T A C G T