Information for 17-CCACTCGGAG (Motif 40)

A T G C G T A C T C G A A G T C C G A T A G T C T C A G C T A G C G T A T C A G
Reverse Opposite:
A G T C G C A T A G T C A G T C T C A G C G T A A C T G A G C T C A T G A T C G
p-value:1e-6
log p-value:-1.582e+01
Information Content per bp:1.713
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.31%
Number of Background Sequences with motif48.7
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets54.6 +/- 24.2bp
Average Position of motif in Background45.2 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CCACTCGGAG-
-----CGGAGC
 A T G C G T A C T C G A A G T C C G A T A G T C T C A G C T A G C G T A T C A G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

PB0114.1_Egr1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------CCACTCGGAG
NNAGTCCCACTCNNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C T C G A A G T C C G A T A G T C T C A G C T A G C G T A T C A G
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCACTCGGAG
MRSCACTYAA--
 A C G T A C G T A T G C G T A C T C G A A G T C C G A T A G T C T C A G C T A G C G T A T C A G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCACTCGGAG---
NCCCCCCCGGGGGGN
 A C G T A C G T A T G C G T A C T C G A A G T C C G A T A G T C T C A G C T A G C G T A T C A G A C G T A C G T A C G T
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

GLIS3/MA0737.1/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCACTCGGAG
GACCCCCCACGAAG
 A C G T A C G T A C G T A C G T A T G C G T A C T C G A A G T C C G A T A G T C T C A G C T A G C G T A T C A G
A C T G T C G A A G T C A G T C G A T C A G T C G T A C A G T C C T G A A G T C C T A G C G T A G T C A A T C G

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCACTCGGAG---
ACCCCCCCGGGGGGN
 A C G T A C G T A T G C G T A C T C G A A G T C C G A T A G T C T C A G C T A G C G T A T C A G A C G T A C G T A C G T
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

PB0101.1_Zic1_1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCACTCGGAG---
CCCCCCCGGGGGNN
 A C G T A T G C G T A C T C G A A G T C C G A T A G T C T C A G C T A G C G T A T C A G A C G T A C G T A C G T
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

GLIS2/MA0736.1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCACTCGGAG
GACCCCCCGCGAAG
 A C G T A C G T A C G T A C G T A T G C G T A C T C G A A G T C C G A T A G T C T C A G C T A G C G T A T C A G
A C T G T C G A A G T C G T A C G A T C G T A C G T A C G A T C C T A G A G T C C T A G C T G A G T C A A T C G

GLIS1/MA0735.1/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CCACTCGGAG-
AGACCCCCCACGAAGC
 A C G T A C G T A C G T A C G T A C G T A T G C G T A C T C G A A G T C C G A T A G T C T C A G C T A G C G T A T C A G A C G T
G T C A A C T G C G T A A T G C G T A C A T G C T A G C A G T C T G A C C T G A A G T C C A T G C G T A G C T A C A T G A T G C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCACTCGGAG
AASCACTCAA--
 A C G T A C G T A T G C G T A C T C G A A G T C C G A T A G T C T C A G C T A G C G T A T C A G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T