Information for 14-TCTATAAAGC (Motif 25)

A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.5 +/- 28.2bp
Average Position of motif in Background11.9 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TCTATAAAGC------
-GTATAAAAGGCGGGG
 A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TCTATAAAGC------
-GTATAAAAGGCGGGG
 A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCTATAAAGC-
NGYCATAAAWCH
 A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TCTATAAAGC---
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCTATAAAGC--
GGCCATAAATCAC
 A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCTATAAAGC
CCAATAAAAC
 A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A G T C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCTATAAAGC-
GGCCATAAATCA
 A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCTATAAAGC-
GGCCATAAATCA
 A C G T A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A G T C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCTATAAAGC
GCAATAAAA-
 A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A G T C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCTATAAAGC
CCAATAAAAA
 A C G T A G T C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A G T C
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A