Information for 13-CAGATTATAG (Motif 22)

A G T C C G T A A C T G C G T A A C G T A C G T C G T A A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C G T C G T A C G T A A C G T G T A C C G A T A C T G
p-value:1e-6
log p-value:-1.424e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif9.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.7 +/- 22.1bp
Average Position of motif in Background34.7 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0174.1_Sox30_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGATTATAG-----
NCGTATTATAATCNTA
 A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

OTX1/MA0711.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CAGATTATAG
CGGATTAN--
 A G T C C G T A A C T G C G T A A C G T A C G T C G T A A C G T C G T A A C T G
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CAGATTATAG
AAAAACGGATTATTG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A C G T C G T A A C T G
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

PB0185.1_Tcf1_2/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CAGATTATAG
TTGCCCGGATTAGG-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A C G T C G T A A C T G
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G A C G T

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CAGATTATAG
NGGATTAA--
 A G T C C G T A A C T G C G T A A C G T A C G T C G T A A C G T C G T A A C T G
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAGATTATAG-----
NANTATTATAATTNNN
 A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGATTATAG
RGGATTAR--
 A G T C C G T A A C T G C G T A A C G T A C G T C G T A A C G T C G T A A C T G
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAGATTATAG
GNGGATTAGN-
 A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A C G T C G T A A C T G
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGATTATAG
AGCTCATTAT--
 A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T C G T A A C G T C G T A A C T G
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAGATTATAG
CCAATTAA--
 A G T C C G T A A C T G C G T A A C G T A C G T C G T A A C G T C G T A A C T G
T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T