Information for 10-AATTCTCTTA (Motif 17)

G C T A C G T A C G A T A G C T G T A C A C G T A T G C A G C T G C A T C G T A
Reverse Opposite:
C G A T C G T A C T G A T A C G C G T A C A T G C T G A C G T A A C G T C G A T
p-value:1e-8
log p-value:-1.932e+01
Information Content per bp:1.833
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif156.4
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets54.2 +/- 23.7bp
Average Position of motif in Background49.2 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AATTCTCTTA-
TAATTNVATTAN
 A C G T G C T A C G T A C G A T A G C T G T A C A C G T A T G C A G C T G C A T C G T A A C G T
G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

Phox2b/MA0681.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AATTCTCTTA
TAATTAAATTA
 A C G T G C T A C G T A C G A T A G C T G T A C A C G T A T G C A G C T G C A T C G T A
G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AATTCTCTTA
TAATTAAATTA
 A C G T G C T A C G T A C G A T A G C T G T A C A C G T A T G C A G C T G C A T C G T A
G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AATTCTCTTA
TAATTAAATTA
 A C G T G C T A C G T A C G A T A G C T G T A C A C G T A T G C A G C T G C A T C G T A
G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

Crx/MA0467.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AATTCTCTTA
CTAATCCTCTT-
 A C G T A C G T G C T A C G T A C G A T A G C T G T A C A C G T A T G C A G C T G C A T C G T A
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AATTCTCTTA-
TAATYNRATTAR
 A C G T G C T A C G T A C G A T A G C T G T A C A C G T A T G C A G C T G C A T C G T A A C G T
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

PB0165.1_Sox11_2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AATTCTCTTA--
AAAATTGTTATGAA
 A C G T A C G T G C T A C G T A C G A T A G C T G T A C A C G T A T G C A G C T G C A T C G T A A C G T A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PH0009.1_Bsx/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AATTCTCTTA-
CAGGTAATTACCTCAG
 A C G T A C G T A C G T A C G T A C G T G C T A C G T A C G A T A G C T G T A C A C G T A T G C A G C T G C A T C G T A A C G T
T G A C T G C A C T A G C A T G G A C T T G C A G T C A A C G T A C G T C T G A A T G C G A T C A G C T T A G C C T G A C T A G

PH0103.1_Meox1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AATTCTCTTA-
GAGGTAATTACCTCAG
 A C G T A C G T A C G T A C G T A C G T G C T A C G T A C G A T A G C T G T A C A C G T A T G C A G C T G C A T C G T A A C G T
T C A G T G C A C A T G C A T G G A C T T G C A G C T A C A G T A C G T C T G A A T G C G T A C G A C T A G T C C G T A C T A G

PH0021.1_Dlx2/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AATTCTCTTA-
GGAATAATTACCTCAG
 A C G T A C G T A C G T A C G T A C G T G C T A C G T A C G A T A G C T G T A C A C G T A T G C A G C T G C A T C G T A A C G T
T C A G T C A G C T A G C T G A G A C T C G T A C G T A C G A T A C G T C T G A A T G C G A C T G A C T G T A C C T G A A C T G