Information for 23-GTTGCCAAGGTGA (Motif 24)

A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C T G A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C
p-value:1e-7
log p-value:-1.821e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.2 +/- 34.7bp
Average Position of motif in Background41.3 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GTTGCCAAGGTGA-
GTTGCCATGGNAAC
 A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C T G A C G T A C T G C G T A A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCAAGGTGA
NGTTGCCATGGCAA
 A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C T G A C G T A C T G C G T A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCAAGGTGA
NNCGTTGCTATGGNN-
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C T G A C G T A C T G C G T A
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCAAGGTGA
GGTTGCCATGGCAA
 A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C T G A C G T A C T G C G T A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GTTGCCAAGGTGA--
GTTGCCATGGCAACM
 A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C T G A C G T A C T G C G T A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCAAGGTGA
CTGTTGCTAGGS---
 A C G T A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C T G A C G T A C T G C G T A
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCAAGGTGA-
CGGTTGCCATGGCAAC
 A C G T A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C T G A C G T A C T G C G T A A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX4/MA0799.1/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCAAGGTGA--
CGTTGCCATGGCAACN
 A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C T G A C G T A C T G C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCAAGGTGA--
CGTTGCCATGGCAACN
 A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C T G A C G T A C T G C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------GTTGCCAAGGTGA---
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C T G A C G T A C T G C G T A A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A