Information for 7-GHAGTAGCCAAGG (Motif 3)

A C T G G A T C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
Reverse Opposite:
A G T C A G T C A C G T A C G T A T C G A T C G A G T C C G A T C G T A A G T C A C G T C A T G G T A C
p-value:1e-15
log p-value:-3.598e+01
Information Content per bp:1.843
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.8 +/- 22.0bp
Average Position of motif in Background72.6 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GHAGTAGCCAAGG----
---GTTGCCATGGNAAC
 A C T G G A T C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GHAGTAGCCAAGG
-CTGTTGCTAGGS
 A C T G G A T C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GHAGTAGCCAAGG--
NNCGTTGCTATGGNN
 A C T G G A T C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GHAGTAGCCAAGG
---CGTGCCAAG-
 A C T G G A T C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GHAGTAGCCAAGG---
--NGTTGCCATGGCAA
 A C T G G A T C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GHAGTAGCCAAGG
ATGTACAGTAGCAAAG-
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GHAGTAGCCAAGG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GHAGTAGCCAAGG
-----TGCCAA--
 A C T G G A T C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GHAGTAGCCAAGG
ATTTACAGTAGCAAAA-
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GHAGTAGCCAAGG------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T