Information for 4-AKAGKGMCCTCTA (Motif 2)

C G T A A C T G C G T A A C T G A C G T A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A
Reverse Opposite:
A C G T C T G A A C T G C G T A A C T G A C T G A C T G G T A C T G A C A G T C A C G T T G A C A C G T
p-value:1e-17
log p-value:-3.931e+01
Information Content per bp:1.887
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.2 +/- 7.5bp
Average Position of motif in Background38.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AKAGKGMCCTCTA
----TGACCYCT-
 C G T A A C T G C G T A A C T G A C G T A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A
A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AKAGKGMCCTCTA-------
ANAGTGCCACCTGGTGGCCA
 C G T A A C T G C G T A A C T G A C G T A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AKAGKGMCCTCTA
GGTTAGAGACCT---
 A C G T A C G T C G T A A C T G C G T A A C T G A C G T A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AKAGKGMCCTCTA
----TGACCTYA-
 C G T A A C T G C G T A A C T G A C G T A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AKAGKGMCCTCTA
---GTGACCTT--
 C G T A A C T G C G T A A C T G A C G T A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A
A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AKAGKGMCCTCTA---
NNNGTGACCTTTGNNN
 C G T A A C T G C G T A A C T G A C G T A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AKAGKGMCCTCTA---
NNNNTTGACCCCTNNNN
 A C G T C G T A A C T G C G T A A C T G A C G T A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C G T A C G T A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AKAGKGMCCTCTA-
----TGACCTTGAT
 C G T A A C T G C G T A A C T G A C G T A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

CTCF/MA0139.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AKAGKGMCCTCTA-------
-TAGCGCCCCCTGGTGGCCA
 C G T A A C T G C G T A A C T G A C G T A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AKAGKGMCCTCTA-----
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T C G T A A C T G C G T A A C T G A C G T A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C