Information for 7-CCTARTCCCACCAGHC (Motif 10)

A G T C G T A C C G A T C G T A C T A G A C G T A G T C A G T C T A G C G C T A A T G C A G T C C G T A A T C G G A C T A G T C
Reverse Opposite:
C T A G C T A G A T G C G A C T A C T G A T C G C G A T A C T G A C T G A C T G C G T A A G T C A C G T C G T A A C T G A C T G
p-value:1e-10
log p-value:-2.328e+01
Information Content per bp:1.748
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.6 +/- 27.9bp
Average Position of motif in Background60.6 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTARTCCCACCAGHC
CTTAATCCC-------
 A G T C G T A C C G A T C G T A C T A G A C G T A G T C A G T C T A G C G C T A A T G C A G T C C G T A A T C G G A C T A G T C
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTARTCCCACCAGHC
GCTAATCCCC------
 A G T C G T A C C G A T C G T A C T A G A C G T A G T C A G T C T A G C G C T A A T G C A G T C C G T A A T C G G A C T A G T C
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTARTCCCACCAGHC
CCTAATCCGC------
 A G T C G T A C C G A T C G T A C T A G A C G T A G T C A G T C T A G C G C T A A T G C A G T C C G T A A T C G G A C T A G T C
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CCTARTCCCACCAGHC
GNNAGCTAATCCCCCN----
 A C G T A C G T A C G T A C G T A G T C G T A C C G A T C G T A C T A G A C G T A G T C A G T C T A G C G C T A A T G C A G T C C G T A A T C G G A C T A G T C
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCTARTCCCACCAGHC
GAGCCCTTGTCCCTAA----
 A C G T A C G T A C G T A C G T A G T C G T A C C G A T C G T A C T A G A C G T A G T C A G T C T A G C G C T A A T G C A G T C C G T A A T C G G A C T A G T C
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTARTCCCACCAGHC
GCTAATCC--------
 A G T C G T A C C G A T C G T A C T A G A C G T A G T C A G T C T A G C G C T A A T G C A G T C C G T A A T C G G A C T A G T C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCTARTCCCACCAGHC
NNTAATCCNGNCNN--
 A G T C G T A C C G A T C G T A C T A G A C G T A G T C A G T C T A G C G C T A A T G C A G T C C G T A A T C G G A C T A G T C
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCTARTCCCACCAGHC-
--ATTTCCCAGVAKSCY
 A G T C G T A C C G A T C G T A C T A G A C G T A G T C A G T C T A G C G C T A A T G C A G T C C G T A A T C G G A C T A G T C A C G T
A C G T A C G T T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTARTCCCACCAGHC
NYTAATCCYB------
 A G T C G T A C C G A T C G T A C T A G A C G T A G T C A G T C T A G C G C T A A T G C A G T C C G T A A T C G G A C T A G T C
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCTARTCCCACCAGHC
-YTAATCCY-------
 A G T C G T A C C G A T C G T A C T A G A C G T A G T C A G T C T A G C G C T A A T G C A G T C C G T A A T C G G A C T A G T C
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T