Information for 2-MTAATCTMCC (Motif 15)

G T C A C G A T C G T A C G T A A C G T A G T C A G C T G T A C A G T C A G T C
Reverse Opposite:
A C T G A C T G C A T G C T G A A C T G C G T A G C A T A C G T G C T A C A G T
p-value:1e-7
log p-value:-1.820e+01
Information Content per bp:1.764
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif3.74%
Number of Background Sequences with motif175.1
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets52.2 +/- 31.6bp
Average Position of motif in Background51.7 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0122.1_Obox2/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----MTAATCTMCC---
ATAGTTAATCCCCCTCA
 A C G T A C G T A C G T A C G T G T C A C G A T C G T A C G T A A C G T A G T C A G C T G T A C A G T C A G T C A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

PH0123.1_Obox3/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----MTAATCTMCC---
ATAGTTAATCCCCCNNA
 A C G T A C G T A C G T A C G T G T C A C G A T C G T A C G T A A C G T A G T C A G C T G T A C A G T C A G T C A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----MTAATCTMCC-
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T A C G T G T C A C G A T C G T A C G T A A C G T A G T C A G C T G T A C A G T C A G T C A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

Crx/MA0467.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:MTAATCTMCC-
CTAATCCTCTT
 G T C A C G A T C G T A C G T A A C G T A G T C A G C T G T A C A G T C A G T C A C G T
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:MTAATCTMCC
YTAATCCY--
 G T C A C G A T C G T A C G T A A C G T A G T C A G C T G T A C A G T C A G T C
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-MTAATCTMCC
NYTAATCCYB-
 A C G T G T C A C G A T C G T A C G T A A C G T A G T C A G C T G T A C A G T C A G T C
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-MTAATCTMCC
CCTAATCCGC-
 A C G T G T C A C G A T C G T A C G T A A C G T A G T C A G C T G T A C A G T C A G T C
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-MTAATCTMCC
GCTAATCCCC-
 A C G T G T C A C G A T C G T A C G T A A C G T A G T C A G C T G T A C A G T C A G T C
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T

PH0121.1_Obox1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----MTAATCTMCC---
NTAGTTAATCCCCTTAN
 A C G T A C G T A C G T A C G T G T C A C G A T C G T A C G T A A C G T A G T C A G C T G T A C A G T C A G T C A C G T A C G T A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

OTX2/MA0712.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:MTAATCTMCC
TTAATCCT--
 G T C A C G A T C G T A C G T A A C G T A G T C A G C T G T A C A G T C A G T C
G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T