Information for 2-CTTGACTTAWAGB (Motif 4)

A G T C A G C T A C G T A C T G C T G A G T A C A C G T G A C T G T C A C G A T C G T A T A C G A G T C
Reverse Opposite:
T A C G A G T C C G A T C G T A A C G T C G T A C G T A A C T G A G C T A G T C C G T A C T G A C T A G
p-value:1e-11
log p-value:-2.694e+01
Information Content per bp:1.744
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.10%
Number of Background Sequences with motif52.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets43.2 +/- 27.5bp
Average Position of motif in Background45.9 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:CTTGACTTAWAGB
-TTGACTTTT---
 A G T C A G C T A C G T A C T G C T G A G T A C A C G T G A C T G T C A C G A T C G T A T A C G A G T C
A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CTTGACTTAWAGB
--TGACTCA----
 A G T C A G C T A C G T A C T G C T G A G T A C A C G T G A C T G T C A C G A T C G T A T A C G A G T C
A C G T A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTTGACTTAWAGB
NNACTTGCCTT-----
 A C G T A C G T A C G T A G T C A G C T A C G T A C T G C T G A G T A C A C G T G A C T G T C A C G A T C G T A T A C G A G T C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTTGACTTAWAGB
--TGAGTCATTTC
 A G T C A G C T A C G T A C T G C T G A G T A C A C G T G A C T G T C A C G A T C G T A T A C G A G T C
A C G T A C G T C G A T A C T G C G T A A T C G A C G T G T A C C G T A C A G T G C A T G A C T G A T C

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTTGACTTAWAGB
-ATGASTCATH--
 A G T C A G C T A C G T A C T G C T G A G T A C A C G T G A C T G T C A C G A T C G T A T A C G A G T C
A C G T T G C A A C G T A C T G C G T A T A G C C G A T G T A C C G T A A C G T G T C A A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTTGACTTAWAGB
NCGTGACN------
 A C G T A G T C A G C T A C G T A C T G C T G A G T A C A C G T G A C T G T C A C G A T C G T A T A C G A G T C
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTTGACTTAWAGB
TGACCTTGACCT-----
 A C G T A C G T A C G T A C G T A G T C A G C T A C G T A C T G C T G A G T A C A C G T G A C T G T C A C G A T C G T A T A C G A G T C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTTGACTTAWAGB
ACCGTGACTAATTNN
 A C G T A C G T A G T C A G C T A C G T A C T G C T G A G T A C A C G T G A C T G T C A C G A T C G T A T A C G A G T C
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTTGACTTAWAGB
-ATGACTCATC--
 A G T C A G C T A C G T A C T G C T G A G T A C A C G T G A C T G T C A C G A T C G T A T A C G A G T C
A C G T T C G A A C G T C A T G G C T A T A G C C G A T G T A C G C T A A C G T A T G C A C G T A C G T

JDP2/MA0655.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTTGACTTAWAGB
-ATGACTCAT---
 A G T C A G C T A C G T A C T G C T G A G T A C A C G T G A C T G T C A C G A T C G T A T A C G A G T C
A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T A C G T A C G T A C G T