Information for 7-GCCCCTTCTTGAC (Motif 12)

A C T G A G T C G A T C A G T C G T A C A C G T C A G T G A T C G A C T A C G T A T C G C G T A G T A C
Reverse Opposite:
C A T G A C G T A T G C G T C A C G T A C A T G G C T A C G T A C A T G T C A G C A T G C T A G T G A C
p-value:1e-7
log p-value:-1.824e+01
Information Content per bp:1.695
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.45%
Number of Background Sequences with motif165.7
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets52.5 +/- 24.2bp
Average Position of motif in Background51.5 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

KLF13/MA0657.1/Jaspar

Match Rank:1
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------GCCCCTTCTTGAC
ATGCCACGCCCCTTTTTG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G A T C A G T C G T A C A C G T C A G T G A T C G A C T A C G T A T C G C G T A G T A C
C T G A C A G T C T A G G T A C G T A C C T G A A T G C C T A G A G T C G T A C G A T C G T A C A G C T G A C T C A G T C A G T C A G T C A T G A C G T A C G T

PB0197.1_Zfp105_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCCCCTTCTTGAC----
NAAANTTATTGAANCAN
 A C T G A G T C G A T C A G T C G T A C A C G T C A G T G A T C G A C T A C G T A T C G C G T A G T A C A C G T A C G T A C G T A C G T
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCCCTTCTTGAC---
TGACCTTTCGTGACCTT
 A C G T A C T G A G T C G A T C A G T C G T A C A C G T C A G T G A T C G A C T A C G T A T C G C G T A G T A C A C G T A C G T A C G T
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCCCCTTCTTGAC-----
---BSNTGTTTACWYWGN
 A C T G A G T C G A T C A G T C G T A C A C G T C A G T G A T C G A C T A C G T A T C G C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

PB0137.1_Irf3_2/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GCCCCTTCTTGAC
NNGCACCTTTCTCC--
 A C G T A C G T A C G T A C T G A G T C G A T C A G T C G T A C A C G T C A G T G A T C G A C T A C G T A T C G C G T A G T A C
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GCCCCTTCTTGAC-
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C T G A G T C G A T C A G T C G T A C A C G T C A G T G A T C G A C T A C G T A T C G C G T A G T A C A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GCCCCTTCTTGAC---
----CNTGTTTACATA
 A C T G A G T C G A T C A G T C G T A C A C G T C A G T G A T C G A C T A C G T A T C G C G T A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCCCCTTCTTGAC
-NCCATTGTTC--
 A C T G A G T C G A T C A G T C G T A C A C G T C A G T G A T C G A C T A C G T A T C G C G T A G T A C
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GCCCCTTCTTGAC--
BTGACCTCTNNHTGACCY
 A C G T A C G T A C G T A C T G A G T C G A T C A G T C G T A C A C G T C A G T G A T C G A C T A C G T A T C G C G T A G T A C A C G T A C G T
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCCCCTTCTTGAC--
TGACCTCTCNNTGACCT
 A C G T A C G T A C T G A G T C G A T C A G T C G T A C A C G T C A G T G A T C G A C T A C G T A T C G C G T A G T A C A C G T A C G T
G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T