Information for 1-YCRGCCAATCRGR (Motif 1)

G A T C G T A C T C G A T C A G A G T C A G T C C G T A G T C A C G A T T A G C T C G A A T C G T C G A
Reverse Opposite:
A G C T T A G C A G C T A T C G C G T A A C G T A C G T A C T G A C T G A G T C A G C T C A T G C T A G
p-value:1e-47
log p-value:-1.105e+02
Information Content per bp:1.654
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif9.70%
Number of Background Sequences with motif334.6
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets50.2 +/- 25.5bp
Average Position of motif in Background47.4 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.96
Offset:2
Orientation:forward strand
Alignment:YCRGCCAATCRGR
--AGCCAATCGG-
 G A T C G T A C T C G A T C A G A G T C A G T C C G T A G T C A C G A T T A G C T C G A A T C G T C G A
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---YCRGCCAATCRGR
AAATGGACCAATCAG-
 A C G T A C G T A C G T G A T C G T A C T C G A T C A G A G T C A G T C C G T A G T C A C G A T T A G C T C G A A T C G T C G A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-YCRGCCAATCRGR
ACTAGCCAATCA--
 A C G T G A T C G T A C T C G A T C A G A G T C A G T C C G T A G T C A C G A T T A G C T C G A A T C G T C G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:YCRGCCAATCRGR-----
TGGACCAATCAGCACTCT
 G A T C G T A C T C G A T C A G A G T C A G T C C G T A G T C A C G A T T A G C T C G A A T C G T C G A A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:YCRGCCAATCRGR
--TGCCAA-----
 G A T C G T A C T C G A T C A G A G T C A G T C C G T A G T C A C G A T T A G C T C G A A T C G T C G A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.73
Offset:4
Orientation:forward strand
Alignment:YCRGCCAATCRGR
----CCAATCAA-
 G A T C G T A C T C G A T C A G A G T C A G T C C G T A G T C A C G A T T A G C T C G A A T C G T C G A
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:YCRGCCAATCRGR
CGTGCCAAG----
 G A T C G T A C T C G A T C A G A G T C A G T C C G T A G T C A C G A T T A G C T C G A A T C G T C G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:8
Score:0.67
Offset:4
Orientation:forward strand
Alignment:YCRGCCAATCRGR-
----CAAATCACTG
 G A T C G T A C T C G A T C A G A G T C A G T C C G T A G T C A C G A T T A G C T C G A A T C G T C G A A C G T
A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

PH0089.1_Isx/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:YCRGCCAATCRGR---
ACNNCTAATTAGNNNN
 G A T C G T A C T C G A T C A G A G T C A G T C C G T A G T C A C G A T T A G C T C G A A T C G T C G A A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:YCRGCCAATCRGR
---GACAATGNN-
 G A T C G T A C T C G A T C A G A G T C A G T C C G T A G T C A C G A T T A G C T C G A A T C G T C G A
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T