Information for 2-ATAAAGCAAA (Motif 9)

C T G A G C A T G T C A C G T A C G T A C T A G G T A C G T C A G T C A C G T A
Reverse Opposite:
C G A T A C G T A C G T A C T G G A T C G C A T A C G T A C G T C G T A G A C T
p-value:1e-6
log p-value:-1.507e+01
Information Content per bp:1.727
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif13.75%
Number of Background Sequences with motif892.0
Percentage of Background Sequences with motif1.85%
Average Position of motif in Targets41.6 +/- 22.0bp
Average Position of motif in Background50.3 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ATAAAGCAAA----
-ATATGCAAATNNN
 C T G A G C A T G T C A C G T A C G T A C T A G G T A C G T C A G T C A C G T A A C G T A C G T A C G T A C G T
A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ATAAAGCAAA-
-TTATGCAAAT
 C T G A G C A T G T C A C G T A C G T A C T A G G T A C G T C A G T C A C G T A A C G T
A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ATAAAGCAAA-
-ATATGCAAAT
 C T G A G C A T G T C A C G T A C G T A C T A G G T A C G T C A G T C A C G T A A C G T
A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ATAAAGCAAA--
--WAAGTAAAYA
 C T G A G C A T G T C A C G T A C G T A C T A G G T A C G T C A G T C A C G T A A C G T A C G T
A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

POU2F1/MA0785.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ATAAAGCAAA--
AATATGCAAATT
 C T G A G C A T G T C A C G T A C G T A C T A G G T A C G T C A G T C A C G T A A C G T A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:ATAAAGCAAA----
--TATGCWAATBAV
 C T G A G C A T G T C A C G T A C G T A C T A G G T A C G T C A G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATAAAGCAAA
CCATCAATCAAA
 A C G T A C G T C T G A G C A T G T C A C G T A C G T A C T A G G T A C G T C A G T C A C G T A
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATAAAGCAAA-----
TTGTATGCAAATTAGA
 A C G T C T G A G C A T G T C A C G T A C G T A C T A G G T A C G T C A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:ATAAAGCAAA----
--WATGCAAATGAG
 C T G A G C A T G T C A C G T A C G T A C T A G G T A C G T C A G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:ATAAAGCAAA--
--AAAGTAAACA
 C T G A G C A T G T C A C G T A C G T A C T A G G T A C G T C A G T C A C G T A A C G T A C G T
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A