Information for 4-CTGACCTTABTAGTTT (Motif 6)

A T G C A C G T A C T G C T G A A G T C A G T C A G C T A C G T C G T A A G T C A C G T C G T A A T C G A G C T A G C T C G A T
Reverse Opposite:
C G T A C T G A C T G A A T G C C G A T G T C A T A C G C G A T G T C A C T G A C T A G C T A G A G C T G T A C C G T A A T C G
p-value:1e-9
log p-value:-2.103e+01
Information Content per bp:1.767
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.75%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 20.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTGACCTTABTAGTTT---
NNTGTTCTTTTTTGTTTACT
 A C G T A T G C A C G T A C T G C T G A A G T C A G T C A G C T A C G T C G T A A G T C A C G T C G T A A T C G A G C T A G C T C G A T A C G T A C G T A C G T
G C A T G C T A C G A T A T C G G C A T C G A T G A T C G A C T G C A T A G C T A G C T A G C T G C A T T C A G A C G T A C G T A C G T C T G A G A T C G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTGACCTTABTAGTTT
GTGACCTT--------
 A T G C A C G T A C T G C T G A A G T C A G T C A G C T A C G T C G T A A G T C A C G T C G T A A T C G A G C T A G C T C G A T
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTGACCTTABTAGTTT
-TGACCTYA-------
 A T G C A C G T A C T G C T G A A G T C A G T C A G C T A C G T C G T A A G T C A C G T C G T A A T C G A G C T A G C T C G A T
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTGACCTTABTAGTTT
CTGACCTTTG------
 A T G C A C G T A C T G C T G A A G T C A G T C A G C T A C G T C G T A A G T C A C G T C G T A A T C G A G C T A G C T C G A T
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGACCTTABTAGTTT
-TGACCT---------
 A T G C A C G T A C T G C T G A A G T C A G T C A G C T A C G T C G T A A G T C A C G T C G T A A T C G A G C T A G C T C G A T
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTGACCTTABTAGTTT
-TGACCTTGAT-----
 A T G C A C G T A C T G C T G A A G T C A G T C A G C T A C G T C G T A A G T C A C G T C G T A A T C G A G C T A G C T C G A T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCTTABTAGTTT
CNNTTGACCTTTG------
 A C G T A C G T A C G T A T G C A C G T A C T G C T G A A G T C A G T C A G C T A C G T C G T A A G T C A C G T C G T A A T C G A G C T A G C T C G A T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGACCTTABTAGTTT
-TGACCYCT-------
 A T G C A C G T A C T G C T G A A G T C A G T C A G C T A C G T C G T A A G T C A C G T C G T A A T C G A G C T A G C T C G A T
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCTTABTAGTTT
NNNGTGACCTTTGNNN---
 A C G T A C G T A C G T A T G C A C G T A C T G C T G A A G T C A G T C A G C T A C G T C G T A A G T C A C G T C G T A A T C G A G C T A G C T C G A T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCTTABTAGTTT
NNNNTGACCTTTNNNN---
 A C G T A C G T A C G T A T G C A C G T A C T G C T G A A G T C A G T C A G C T A C G T C G T A A G T C A C G T C G T A A T C G A G C T A G C T C G A T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A A C G T A C G T A C G T