Information for 1-TAGAACTATCTCATAA (Motif 2)

G A C T C G T A A C T G C G T A C G T A G T A C A C G T C G T A C G A T A T G C A C G T A G T C C G T A C G A T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T C T A G C G T A A T C G C G T A C G A T C G T A A C T G A C G T C G A T A G T C A C G T C G T A
p-value:1e-10
log p-value:-2.440e+01
Information Content per bp:1.842
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.2 +/- 30.7bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TAGAACTATCTCATAA-----
-----AAAGCTCGTAAAATTT
 G A C T C G T A A C T G C G T A C G T A G T A C A C G T C G T A C G A T A T G C A C G T A G T C C G T A C G A T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TAGAACTATCTCATAA
TATAAGTAGGTCAA--
 G A C T C G T A A C T G C G T A C G T A G T A C A C G T C G T A C G A T A T G C A C G T A G T C C G T A C G A T C G T A C G T A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TAGAACTATCTCATAA
---AAYTAGGTCA---
 G A C T C G T A A C T G C G T A C G T A G T A C A C G T C G T A C G A T A T G C A C G T A G T C C G T A C G A T C G T A C G T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:4
Score:0.52
Offset:9
Orientation:forward strand
Alignment:TAGAACTATCTCATAA---
---------GTCGTAAAAT
 G A C T C G T A A C T G C G T A C G T A G T A C A C G T C G T A C G A T A T G C A C G T A G T C C G T A C G A T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0065.1_Hoxc10/Jaspar

Match Rank:5
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TAGAACTATCTCATAA-----
-----TAAAGTCGTAAAACGT
 G A C T C G T A A C T G C G T A C G T A G T A C A C G T C G T A C G A T A T G C A C G T A G T C C G T A C G A T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.51
Offset:9
Orientation:forward strand
Alignment:TAGAACTATCTCATAA---
---------GTCATAAAAN
 G A C T C G T A A C T G C G T A C G T A G T A C A C G T C G T A C G A T A T G C A C G T A G T C C G T A C G A T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TAGAACTATCTCATAA-----
-----AAACCTCGTAAAATTT
 G A C T C G T A A C T G C G T A C G T A G T A C A C G T C G T A C G A T A T G C A C G T A G T C C G T A C G A T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:8
Score:0.51
Offset:-6
Orientation:forward strand
Alignment:------TAGAACTATCTCATAA
TATCATTAGAACGCT-------
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C T G C G T A C G T A G T A C A C G T C G T A C G A T A T G C A C G T A G T C C G T A C G A T C G T A C G T A
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.50
Offset:9
Orientation:forward strand
Alignment:TAGAACTATCTCATAA--
---------GCAATAAAA
 G A C T C G T A A C T G C G T A C G T A G T A C A C G T C G T A C G A T A T G C A C G T A G T C C G T A C G A T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.50
Offset:7
Orientation:forward strand
Alignment:TAGAACTATCTCATAA--
-------AAGCCATAAAA
 G A C T C G T A A C T G C G T A C G T A G T A C A C G T C G T A C G A T A T G C A C G T A G T C C G T A C G A T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A