Information for 5-GCCTGGCTTT (Motif 11)

A C T G A T G C A G T C G A C T A C T G C T A G A T G C A C G T A C G T A C G T
Reverse Opposite:
G T C A T G C A C G T A A T C G A G T C A G T C C T G A C T A G A T C G A G T C
p-value:1e-6
log p-value:-1.538e+01
Information Content per bp:1.783
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif4.84%
Number of Background Sequences with motif340.5
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets48.5 +/- 27.2bp
Average Position of motif in Background50.2 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GCCTGGCTTT
----NGCTN-
 A C T G A T G C A G T C G A C T A C T G C T A G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GCCTGGCTTT
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G T C G A C T A C T G C T A G A T G C A C G T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCTGGCTTT
GGTCTGGCAT-
 A C G T A C T G A T G C A G T C G A C T A C T G C T A G A T G C A C G T A C G T A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGGCTTT----
GGNGCGNCTGTTNNN
 A C G T A C T G A T G C A G T C G A C T A C T G C T A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCCTGGCTTT
--TWGTCTGV
 A C T G A T G C A G T C G A C T A C T G C T A G A T G C A C G T A C G T A C G T
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCCTGGCTTT
AGGCCTAG----
 A C G T A C G T A C T G A T G C A G T C G A C T A C T G C T A G A T G C A C G T A C G T A C G T
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------GCCTGGCTTT-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G T C G A C T A C T G C T A G A T G C A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCCTGGCTTT
-NTTGGCANN
 A C T G A T G C A G T C G A C T A C T G C T A G A T G C A C G T A C G T A C G T
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCCTGGCTTT
--TTGGCA--
 A C T G A T G C A G T C G A C T A C T G C T A G A T G C A C G T A C G T A C G T
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCCTGGCTTT
AGGCCTNG----
 A C G T A C G T A C T G A T G C A G T C G A C T A C T G C T A G A T G C A C G T A C G T A C G T
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T