Information for 10-GCTGTGCGTC (Motif 9)

A C T G A G T C A C G T A C T G A C G T A C T G A G T C A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A C T G A G T C C G T A A G T C C G T A A C T G A G T C
p-value:1e-3
log p-value:-7.779e+00
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif18.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.6 +/- 24.8bp
Average Position of motif in Background63.2 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTGTGCGTC
GCTGTG----
 A C T G A G T C A C G T A C T G A C G T A C T G A G T C A C T G A C G T A G T C
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------GCTGTGCGTC
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C A C T G A C G T A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GCTGTGCGTC
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C A C T G A C G T A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GCTGTGCGTC
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C A C T G A C G T A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCTGTGCGTC
CCTGCTGAGH---
 A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C A C T G A C G T A G T C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCTGTGCGTC
NNGCNCTGCGCGGC
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C A C T G A C G T A G T C
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C

PB0108.1_Atf1_2/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCTGTGCGTC----
NTTATTCGTCATNC
 A C T G A G T C A C G T A C T G A C G T A C T G A G T C A C T G A C G T A G T C A C G T A C G T A C G T A C G T
C A T G G C A T G C A T T C G A G A C T C A G T A G T C T A C G G A C T G A T C T C G A A G C T G A C T A T G C

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCTGTGCGTC
NGCTN------
 A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C A C T G A C G T A G T C
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Atf1/MA0604.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCTGTGCGTC--
----TACGTCAT
 A C T G A G T C A C G T A C T G A C G T A C T G A G T C A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GCTGTGCGTC
CCCCCTGCTGTG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C A C T G A C G T A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T