Information for 5-CGCCAGWVVR (Motif 5)

A T G C A T C G A T G C A G T C G T C A C A T G C G T A T C A G T A G C C T A G
Reverse Opposite:
G A T C A T C G A G T C C G A T G T A C A C G T A C T G A T C G A T G C T A C G
p-value:1e-11
log p-value:-2.648e+01
Information Content per bp:1.653
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.21%
Number of Background Sequences with motif515.1
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets49.3 +/- 27.9bp
Average Position of motif in Background52.7 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---CGCCAGWVVR
GTCCGCCATTA--
 A C G T A C G T A C G T A T G C A T C G A T G C A G T C G T C A C A T G C G T A T C A G T A G C C T A G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CGCCAGWVVR
CGTGCCAAG---
 A C G T A C G T A T G C A T C G A T G C A G T C G T C A C A T G C G T A T C A G T A G C C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGCCAGWVVR
TGCCAA----
 A T G C A T C G A T G C A G T C G T C A C A T G C G T A T C A G T A G C C T A G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAGWVVR
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A T C G A T G C A G T C G T C A C A T G C G T A T C A G T A G C C T A G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAGWVVR
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A T C G A T G C A G T C G T C A C A T G C G T A T C A G T A G C C T A G
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGCCAGWVVR
ATGCCAGACN-
 A C G T A T G C A T C G A T G C A G T C G T C A C A T G C G T A T C A G T A G C C T A G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:7
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAGWVVR
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A T C G A T G C A G T C G T C A C A T G C G T A T C A G T A G C C T A G
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

E2F1/MA0024.3/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CGCCAGWVVR
TTTGGCGCCAAA---
 A C G T A C G T A C G T A C G T A C G T A T G C A T C G A T G C A G T C G T C A C A T G C G T A T C A G T A G C C T A G
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CGCCAGWVVR
AGCGCGCC------
 A C G T A C G T A C G T A C G T A T G C A T C G A T G C A G T C G T C A C A T G C G T A T C A G T A G C C T A G
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGCCAGWVVR
ACGTCA-----
 A C G T A T G C A T C G A T G C A G T C G T C A C A T G C G T A T C A G T A G C C T A G
C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T