Information for 5-AGRGCGMCGNTTGTGG (Motif 9)

C T G A A T C G C T G A A C T G G T A C A C T G G T A C A G T C A T C G A T G C A G C T C A G T A T C G A C G T A C T G A C T G
Reverse Opposite:
G T A C A G T C C G T A A T G C G T C A C T G A A T C G T A G C A C T G A C T G G T A C A C T G A G T C G A C T A T G C A G C T
p-value:1e-9
log p-value:-2.172e+01
Information Content per bp:1.728
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif30.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets54.0 +/- 18.7bp
Average Position of motif in Background47.4 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF354C/MA0130.1/Jaspar

Match Rank:1
Score:0.57
Offset:12
Orientation:reverse strand
Alignment:AGRGCGMCGNTTGTGG--
------------GTGGAT
 C T G A A T C G C T G A A C T G G T A C A C T G G T A C A G T C A T C G A T G C A G C T C A G T A T C G A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:AGRGCGMCGNTTGTGG----
--------NNHTGTGGTTWN
 C T G A A T C G C T G A A C T G G T A C A C T G G T A C A G T C A T C G A T G C A G C T C A G T A T C G A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.56
Offset:8
Orientation:forward strand
Alignment:AGRGCGMCGNTTGTGG---
--------GTCTGTGGTTT
 C T G A A T C G C T G A A C T G G T A C A C T G G T A C A G T C A T C G A T G C A G C T C A G T A T C G A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:AGRGCGMCGNTTGTGG---
---------NNTGTGGTTT
 C T G A A T C G C T G A A C T G G T A C A C T G G T A C A G T C A T C G A T G C A G C T C A G T A T C G A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGRGCGMCGNTTGTGG
AGCGCGCC--------
 C T G A A T C G C T G A A C T G G T A C A C T G G T A C A G T C A T C G A T G C A G C T C A G T A T C G A C G T A C T G A C T G
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.52
Offset:9
Orientation:forward strand
Alignment:AGRGCGMCGNTTGTGG---
---------GCTGTGGTTT
 C T G A A T C G C T G A A C T G G T A C A C T G G T A C A G T C A T C G A T G C A G C T C A G T A T C G A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGRGCGMCGNTTGTGG
--AGGVNCCTTTGT--
 C T G A A T C G C T G A A C T G G T A C A C T G G T A C A G T C A T C G A T G C A G C T C A G T A T C G A C G T A C T G A C T G
A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AGRGCGMCGNTTGTGG
TTGGGGGCGCCCCTAG---
 A C G T A C G T A C G T C T G A A T C G C T G A A C T G G T A C A C T G G T A C A G T C A T C G A T G C A G C T C A G T A T C G A C G T A C T G A C T G
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.51
Offset:10
Orientation:reverse strand
Alignment:AGRGCGMCGNTTGTGG----
----------CTGTGGTTTN
 C T G A A T C G C T G A A C T G G T A C A C T G G T A C A G T C A T C G A T G C A G C T C A G T A T C G A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:AGRGCGMCGNTTGTGG
-GACCCCCCGCTGTG-
 C T G A A T C G C T G A A C T G G T A C A C T G G T A C A G T C A T C G A T G C A G C T C A G T A T C G A C G T A C T G A C T G
A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T