Information for 4-ATGGCACTAT (Motif 3)

T G C A G C A T C T A G T C A G G T A C C T G A T G A C G C A T T C G A A G C T
Reverse Opposite:
T C G A A G C T C G T A A C T G G A C T C A T G A G T C G A T C C G T A A C G T
p-value:1e-20
log p-value:-4.830e+01
Information Content per bp:1.658
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif7.25%
Number of Background Sequences with motif796.9
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets54.1 +/- 25.1bp
Average Position of motif in Background48.2 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCACTAT
NTTGGCANN--
 A C G T T G C A G C A T C T A G T C A G G T A C C T G A T G A C G C A T T C G A A G C T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATGGCACTAT
NNTTGGCANN--
 A C G T A C G T T G C A G C A T C T A G T C A G G T A C C T G A T G A C G C A T T C G A A G C T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ATGGCACTAT
GGTTGGCAT---
 A C G T A C G T T G C A G C A T C T A G T C A G G T A C C T G A T G A C G C A T T C G A A G C T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATGGCACTAT
TTGGCA----
 T G C A G C A T C T A G T C A G G T A C C T G A T G A C G C A T T C G A A G C T
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCACTAT
CTTGGCAA---
 A C G T T G C A G C A T C T A G T C A G G T A C C T G A T G A C G C A T T C G A A G C T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ATGGCACTAT-
ATTGCACAATA
 T G C A G C A T C T A G T C A G G T A C C T G A T G A C G C A T T C G A A G C T A C G T
T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATGGCACTAT
ARNTGACA----
 A C G T A C G T T G C A G C A T C T A G T C A G G T A C C T G A T G A C G C A T T C G A A G C T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------ATGGCACTAT
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T C T A G T C A G G T A C C T G A T G A C G C A T T C G A A G C T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ATGGCACTAT-----
-TGGCACCATGCCAA
 T G C A G C A T C T A G T C A G G T A C C T G A T G A C G C A T T C G A A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

FOXB1/MA0845.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ATGGCACTAT
TATGTAAATAT
 A C G T T G C A G C A T C T A G T C A G G T A C C T G A T G A C G C A T T C G A A G C T
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T