Information for 3-CCCAGAAGGC (Motif 4)

A G T C G A T C A T G C C G T A A C T G T C G A C T G A A C T G T A C G A G T C
Reverse Opposite:
C T A G A G T C G T A C A G C T A C G T T A G C G A C T A T C G C A T G A C T G
p-value:1e-38
log p-value:-8.888e+01
Information Content per bp:1.829
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.96%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets54.4 +/- 27.5bp
Average Position of motif in Background17.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:1
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----CCCAGAAGGC-
ATTTCCCAGVAKSCY
 A C G T A C G T A C G T A C G T A G T C G A T C A T G C C G T A A C T G T C G A C T G A A C T G T A C G A G T C A C G T
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CCCAGAAGGC--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C G A T C A T G C C G T A A C T G T C G A C T G A A C T G T A C G A G T C A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCCAGAAGGC--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C G A T C A T G C C G T A A C T G T C G A C T G A A C T G T A C G A G T C A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZNF143/MA0088.2/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCCAGAAGGC----
TACCCACAATGCATTG
 A C G T A C G T A G T C G A T C A T G C C G T A A C T G T C G A C T G A A C T G T A C G A G T C A C G T A C G T A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCCAGAAGGC-
TGCCCTGAGGGCA
 A C G T A C G T A G T C G A T C A T G C C G T A A C T G T C G A C T G A A C T G T A C G A G T C A C G T
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCCAGAAGGC--
CACAGCAGGGGG
 A G T C G A T C A T G C C G T A A C T G T C G A C T G A A C T G T A C G A G T C A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCCAGAAGGC--
GAGCACAGCAGGACA
 A C G T A C G T A C G T A G T C G A T C A T G C C G T A A C T G T C G A C T G A A C T G T A C G A G T C A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGAAGGC
DCTCAGCAGG-
 A C G T A G T C G A T C A T G C C G T A A C T G T C G A C T G A A C T G T A C G A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:9
Score:0.65
Offset:-10
Orientation:forward strand
Alignment:----------CCCAGAAGGC
AACTACAATTCCCAGAATGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C A T G C C G T A A C T G T C G A C T G A A C T G T A C G A G T C
T C G A C G T A A G T C A G C T C G T A A G T C T C G A G C T A G A C T C G A T A G T C A G T C A G T C C T G A T C A G T G C A T C G A C A G T A T C G A G T C

STAT3/MA0144.2/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCCAGAAGGC
TTTCCCAGAAN--
 A C G T A C G T A C G T A G T C G A T C A T G C C G T A A C T G T C G A C T G A A C T G T A C G A G T C
G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G A C G T A C G T