Information for 2-CGCCCTCTGCTGG (Motif 3)

G A T C A C T G A G T C A T G C G T A C G A C T A T G C A C G T A T C G A T G C G A C T A T C G A T C G
Reverse Opposite:
T A G C A T G C C T G A T A C G A T G C T G C A A T C G C T G A C A T G A T C G C T A G G T A C C T A G
p-value:1e-16
log p-value:-3.748e+01
Information Content per bp:1.682
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.25%
Number of Background Sequences with motif519.6
Percentage of Background Sequences with motif1.14%
Average Position of motif in Targets54.4 +/- 24.8bp
Average Position of motif in Background51.0 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.85
Offset:-6
Orientation:forward strand
Alignment:------CGCCCTCTGCTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C A C T G A G T C A T G C G T A C G A C T A T G C A C G T A T C G A T G C G A C T A T C G A T C G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---CGCCCTCTGCTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T G A T C A C T G A G T C A T G C G T A C G A C T A T G C A C G T A T C G A T G C G A C T A T C G A T C G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----CGCCCTCTGCTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T G A T C A C T G A G T C A T G C G T A C G A C T A T G C A C G T A T C G A T G C G A C T A T C G A T C G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CGCCCTCTGCTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T G A T C A C T G A G T C A T G C G T A C G A C T A T G C A C G T A T C G A T G C G A C T A T C G A T C G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGCCCTCTGCTGG-
--CCCCCTGCTGTG
 G A T C A C T G A G T C A T G C G T A C G A C T A T G C A C G T A T C G A T G C G A C T A T C G A T C G A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGCCCTCTGCTGG--
GGCCYCCTGCTGDGH
 G A T C A C T G A G T C A T G C G T A C G A C T A T G C A C G T A T C G A T G C G A C T A T C G A T C G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

EGR1/MA0162.2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CGCCCTCTGCTGG
CCCCCGCCCCCGCC---
 A C G T A C G T A C G T A C G T G A T C A C T G A G T C A T G C G T A C G A C T A T G C A C G T A T C G A T G C G A C T A T C G A T C G
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C A C G T A C G T A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGCCCTCTGCTGG
YCCGCCCACGCN---
 A C G T A C G T G A T C A C T G A G T C A T G C G T A C G A C T A T G C A C G T A T C G A T G C G A C T A T C G A T C G
G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCCCTCTGCTGG--
GACCCCCCGCTGCGC
 G A T C A C T G A G T C A T G C G T A C G A C T A T G C A C G T A T C G A T G C G A C T A T C G A T C G A C G T A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGCCCTCTGCTGG
-GCCATCTGTT--
 G A T C A C T G A G T C A T G C G T A C G A C T A T G C A C G T A T C G A T G C G A C T A T C G A T C G
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T