Information for 5-SCCTGTGGTGYSWGKW (Motif 13)

A T C G A G T C A G T C A C G T A C T G A C G T A C T G A C T G C G A T A C T G A G T C A T C G G C A T A T C G A C G T C G A T
Reverse Opposite:
C G T A T G C A A T G C C G T A A T G C C T A G A G T C C G T A A G T C A G T C C G T A A G T C G T C A A C T G A C T G A T G C
p-value:1e-10
log p-value:-2.455e+01
Information Content per bp:1.844
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.0 +/- 15.7bp
Average Position of motif in Background73.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:SCCTGTGGTGYSWGKW
-GCTGTGGTTT-----
 A T C G A G T C A G T C A C G T A C T G A C G T A C T G A C T G C G A T A C T G A G T C A T C G G C A T A T C G A C G T C G A T
A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:SCCTGTGGTGYSWGKW
NNHTGTGGTTWN----
 A T C G A G T C A G T C A C G T A C T G A C G T A C T G A C T G C G A T A C T G A G T C A T C G G C A T A T C G A C G T C G A T
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:SCCTGTGGTGYSWGKW
GTCTGTGGTTT-----
 A T C G A G T C A G T C A C G T A C T G A C G T A C T G A C T G C G A T A C T G A G T C A T C G G C A T A T C G A C G T C G A T
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:SCCTGTGGTGYSWGKW
--CTGTGGTTTN----
 A T C G A G T C A G T C A C G T A C T G A C G T A C T G A C T G C G A T A C T G A G T C A T C G G C A T A T C G A C G T C G A T
A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:SCCTGTGGTGYSWGKW
-NNTGTGGTTT-----
 A T C G A G T C A G T C A C G T A C T G A C G T A C T G A C T G C G A T A C T G A G T C A T C G G C A T A T C G A C G T C G A T
A C G T A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:SCCTGTGGTGYSWGKW
-GCTGTG---------
 A T C G A G T C A G T C A C G T A C T G A C G T A C T G A C T G C G A T A C T G A G T C A T C G G C A T A T C G A C G T C G A T
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:SCCTGTGGTGYSWGKW
----GTGGAT------
 A T C G A G T C A G T C A C G T A C T G A C G T A C T G A C T G C G A T A C T G A G T C A T C G G C A T A T C G A C G T C G A T
A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-SCCTGTGGTGYSWGKW
NGCCTGAGGCN------
 A C G T A T C G A G T C A G T C A C G T A C T G A C G T A C T G A C T G C G A T A C T G A G T C A T C G G C A T A T C G A C G T C G A T
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--SCCTGTGGTGYSWGKW
CCCCCTGCTGTG------
 A C G T A C G T A T C G A G T C A G T C A C G T A C T G A C G T A C T G A C T G C G A T A C T G A G T C A T C G G C A T A T C G A C G T C G A T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:SCCTGTGGTGYSWGKW
CCATGTGCTT------
 A T C G A G T C A G T C A C G T A C T G A C G T A C T G A C T G C G A T A C T G A G T C A T C G G C A T A T C G A C G T C G A T
T G A C A G T C C G T A A G C T A C T G A C G T A C T G A T G C G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T