Information for 3-AGACAGAATGTKGGTC (Motif 3)

C G T A A T C G C T G A A G T C C G T A C T A G T G C A C G T A C A G T T A C G A C G T A C G T C A T G T C A G A C G T A G T C
Reverse Opposite:
T A C G C G T A A G T C G A T C G T C A G T C A A T G C G T C A A C G T A C G T A G T C A C G T A C T G A G C T A T G C C G A T
p-value:1e-11
log p-value:-2.743e+01
Information Content per bp:1.712
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets33.8 +/- 22.4bp
Average Position of motif in Background51.0 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGAATGTKGGTC
CCAGACAG----------
 A C G T A C G T C G T A A T C G C T G A A G T C C G T A C T A G T G C A C G T A C A G T T A C G A C G T A C G T C A T G T C A G A C G T A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGACAGAATGTKGGTC
TTGACAG----------
 A C G T C G T A A T C G C T G A A G T C C G T A C T A G T G C A C G T A C A G T T A C G A C G T A C G T C A T G T C A G A C G T A G T C
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGACAGAATGTKGGTC
-CACAGN---------
 C G T A A T C G C T G A A G T C C G T A C T A G T G C A C G T A C A G T T A C G A C G T A C G T C A T G T C A G A C G T A G T C
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGACAGAATGTKGGTC
-AACAGATGGT-----
 C G T A A T C G C T G A A G T C C G T A C T A G T G C A C G T A C A G T T A C G A C G T A C G T C A T G T C A G A C G T A G T C
A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGACAGAATGTKGGTC
-AACAKATGGY-----
 C G T A A T C G C T G A A G T C C G T A C T A G T G C A C G T A C A G T T A C G A C G T A C G T C A T G T C A G A C G T A G T C
A C G T C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGACAGAATGTKGGTC
TTGACAGC---------
 A C G T C G T A A T C G C T G A A G T C C G T A C T A G T G C A C G T A C A G T T A C G A C G T A C G T C A T G T C A G A C G T A G T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGACAGAATGTKGGTC
TTGACAGG---------
 A C G T C G T A A T C G C T G A A G T C C G T A C T A G T G C A C G T A C A G T T A C G A C G T A C G T C A T G T C A G A C G T A G T C
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------AGACAGAATGTKGGTC
CAAATCCAGACATCACA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T C G C T G A A G T C C G T A C T A G T G C A C G T A C A G T T A C G A C G T A C G T C A T G T C A G A C G T A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGAATGTKGGTC
BCAGACWA----------
 A C G T A C G T C G T A A T C G C T G A A G T C C G T A C T A G T G C A C G T A C A G T T A C G A C G T A C G T C A T G T C A G A C G T A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGAATGTKGGTC
CCAGACRSVB--------
 A C G T A C G T C G T A A T C G C T G A A G T C C G T A C T A G T G C A C G T A C A G T T A C G A C G T A C G T C A T G T C A G A C G T A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T