| p-value: | 1e-8 |
| log p-value: | -2.032e+01 |
| Information Content per bp: | 1.919 |
| Number of Target Sequences with motif | 4.0 |
| Percentage of Target Sequences with motif | 0.60% |
| Number of Background Sequences with motif | 0.7 |
| Percentage of Background Sequences with motif | 0.00% |
| Average Position of motif in Targets | 33.8 +/- 18.5bp |
| Average Position of motif in Background | 41.0 +/- 0.0bp |
| Strand Bias (log2 ratio + to - strand density) | -1.6 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix)
reverse opposite |
| SVG Files for Logos: | forward logo
reverse opposite |
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
| Match Rank: | 1 |
| Score: | 0.65
| | Offset: | 4
| | Orientation: | forward strand |
| Alignment: | CCTAAACGAGGTCAGA
----AAYTAGGTCA-- |
|
|
|
RORA/MA0071.1/Jaspar
| Match Rank: | 2 |
| Score: | 0.65
| | Offset: | 4
| | Orientation: | forward strand |
| Alignment: | CCTAAACGAGGTCAGA
----ATCAAGGTCA-- |
|
|
|
RORA(var.2)/MA0072.1/Jaspar
| Match Rank: | 3 |
| Score: | 0.63
| | Offset: | 1
| | Orientation: | forward strand |
| Alignment: | CCTAAACGAGGTCAGA
-TATAAGTAGGTCAA- |
|
|
|
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer
| Match Rank: | 4 |
| Score: | 0.59
| | Offset: | 6
| | Orientation: | forward strand |
| Alignment: | CCTAAACGAGGTCAGA
------TRAGGTCA-- |
|
|
|
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer
| Match Rank: | 5 |
| Score: | 0.58
| | Offset: | 6
| | Orientation: | forward strand |
| Alignment: | CCTAAACGAGGTCAGA
------AGRGGTCA-- |
|
|
|
MF0004.1_Nuclear_Receptor_class/Jaspar
| Match Rank: | 6 |
| Score: | 0.57
| | Offset: | 8
| | Orientation: | forward strand |
| Alignment: | CCTAAACGAGGTCAGA
--------AGGTCA-- |
|
|
|
BARHL2/MA0635.1/Jaspar
| Match Rank: | 7 |
| Score: | 0.56
| | Offset: | 0
| | Orientation: | forward strand |
| Alignment: | CCTAAACGAGGTCAGA
GCTAAACGGT------ |
|
|
|
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer
| Match Rank: | 8 |
| Score: | 0.55
| | Offset: | 5
| | Orientation: | reverse strand |
| Alignment: | CCTAAACGAGGTCAGA
-----TCAAGGTCAN- |
|
|
|
NR4A2/MA0160.1/Jaspar
| Match Rank: | 9 |
| Score: | 0.55
| | Offset: | 7
| | Orientation: | forward strand |
| Alignment: | CCTAAACGAGGTCAGA
-------AAGGTCAC- |
|
|
|
PB0185.1_Tcf1_2/Jaspar
| Match Rank: | 10 |
| Score: | 0.54
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | CCTAAACGAGGTCAGA
NNTAATCCNGNCNN-- |
|
|
|
