Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-37 | -8.702e+01 | 0.0000 | 158.0 | 18.99% | 2799.8 | 5.89% | motif file (matrix) |
svg |
2 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-37 | -8.576e+01 | 0.0000 | 177.0 | 21.27% | 3459.9 | 7.28% | motif file (matrix) |
svg |
3 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-31 | -7.216e+01 | 0.0000 | 147.0 | 17.67% | 2820.0 | 5.93% | motif file (matrix) |
svg |
4 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-27 | -6.407e+01 | 0.0000 | 119.0 | 14.30% | 2120.8 | 4.46% | motif file (matrix) |
svg |
5 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-27 | -6.261e+01 | 0.0000 | 71.0 | 8.53% | 807.4 | 1.70% | motif file (matrix) |
svg |
6 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-24 | -5.608e+01 | 0.0000 | 116.0 | 13.94% | 2231.9 | 4.69% | motif file (matrix) |
svg |
7 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-23 | -5.418e+01 | 0.0000 | 292.0 | 35.10% | 9510.5 | 20.01% | motif file (matrix) |
svg |
8 |
| Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-16 | -3.880e+01 | 0.0000 | 170.0 | 20.43% | 4953.1 | 10.42% | motif file (matrix) |
svg |
9 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-16 | -3.858e+01 | 0.0000 | 106.0 | 12.74% | 2434.6 | 5.12% | motif file (matrix) |
svg |
10 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-14 | -3.334e+01 | 0.0000 | 136.0 | 16.35% | 3821.9 | 8.04% | motif file (matrix) |
svg |
11 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-14 | -3.242e+01 | 0.0000 | 90.0 | 10.82% | 2078.2 | 4.37% | motif file (matrix) |
svg |
12 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-13 | -3.185e+01 | 0.0000 | 179.0 | 21.51% | 5746.5 | 12.09% | motif file (matrix) |
svg |
13 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-13 | -3.172e+01 | 0.0000 | 106.0 | 12.74% | 2704.2 | 5.69% | motif file (matrix) |
svg |
14 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-13 | -3.036e+01 | 0.0000 | 135.0 | 16.23% | 3935.8 | 8.28% | motif file (matrix) |
svg |
15 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-12 | -2.983e+01 | 0.0000 | 109.0 | 13.10% | 2905.6 | 6.11% | motif file (matrix) |
svg |
16 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-12 | -2.795e+01 | 0.0000 | 122.0 | 14.66% | 3524.5 | 7.41% | motif file (matrix) |
svg |
17 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-11 | -2.749e+01 | 0.0000 | 39.0 | 4.69% | 563.2 | 1.18% | motif file (matrix) |
svg |
18 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-11 | -2.670e+01 | 0.0000 | 138.0 | 16.59% | 4271.9 | 8.99% | motif file (matrix) |
svg |
19 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-11 | -2.627e+01 | 0.0000 | 173.0 | 20.79% | 5852.3 | 12.31% | motif file (matrix) |
svg |
20 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-11 | -2.618e+01 | 0.0000 | 89.0 | 10.70% | 2291.1 | 4.82% | motif file (matrix) |
svg |
21 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-11 | -2.592e+01 | 0.0000 | 185.0 | 22.24% | 6429.7 | 13.52% | motif file (matrix) |
svg |
22 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-9 | -2.274e+01 | 0.0000 | 125.0 | 15.02% | 3955.6 | 8.32% | motif file (matrix) |
svg |
23 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-9 | -2.193e+01 | 0.0000 | 295.0 | 35.46% | 12215.8 | 25.70% | motif file (matrix) |
svg |
24 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-9 | -2.190e+01 | 0.0000 | 65.0 | 7.81% | 1566.7 | 3.30% | motif file (matrix) |
svg |
25 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-9 | -2.157e+01 | 0.0000 | 125.0 | 15.02% | 4032.0 | 8.48% | motif file (matrix) |
svg |
26 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-9 | -2.130e+01 | 0.0000 | 136.0 | 16.35% | 4537.4 | 9.54% | motif file (matrix) |
svg |
27 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-8 | -1.931e+01 | 0.0000 | 48.0 | 5.77% | 1054.0 | 2.22% | motif file (matrix) |
svg |
28 |
| Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer | 1e-8 | -1.894e+01 | 0.0000 | 92.0 | 11.06% | 2780.6 | 5.85% | motif file (matrix) |
svg |
29 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-8 | -1.844e+01 | 0.0000 | 68.0 | 8.17% | 1831.0 | 3.85% | motif file (matrix) |
svg |
30 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-7 | -1.834e+01 | 0.0000 | 151.0 | 18.15% | 5453.6 | 11.47% | motif file (matrix) |
svg |
31 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-7 | -1.777e+01 | 0.0000 | 92.0 | 11.06% | 2851.6 | 6.00% | motif file (matrix) |
svg |
32 |
| Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer | 1e-7 | -1.775e+01 | 0.0000 | 134.0 | 16.11% | 4715.8 | 9.92% | motif file (matrix) |
svg |
33 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-7 | -1.763e+01 | 0.0000 | 47.0 | 5.65% | 1077.5 | 2.27% | motif file (matrix) |
svg |
34 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-7 | -1.712e+01 | 0.0000 | 119.0 | 14.30% | 4081.5 | 8.59% | motif file (matrix) |
svg |
35 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.699e+01 | 0.0000 | 47.0 | 5.65% | 1101.3 | 2.32% | motif file (matrix) |
svg |
36 |
| HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-7 | -1.695e+01 | 0.0000 | 66.0 | 7.93% | 1825.8 | 3.84% | motif file (matrix) |
svg |
37 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-7 | -1.671e+01 | 0.0000 | 61.0 | 7.33% | 1640.6 | 3.45% | motif file (matrix) |
svg |
38 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-7 | -1.665e+01 | 0.0000 | 59.0 | 7.09% | 1565.3 | 3.29% | motif file (matrix) |
svg |
39 |
| Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer | 1e-7 | -1.645e+01 | 0.0000 | 160.0 | 19.23% | 6049.8 | 12.73% | motif file (matrix) |
svg |
40 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-6 | -1.526e+01 | 0.0000 | 95.0 | 11.42% | 3148.5 | 6.62% | motif file (matrix) |
svg |
41 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-6 | -1.513e+01 | 0.0000 | 97.0 | 11.66% | 3246.4 | 6.83% | motif file (matrix) |
svg |
42 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-6 | -1.406e+01 | 0.0000 | 81.0 | 9.74% | 2620.4 | 5.51% | motif file (matrix) |
svg |
43 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-5 | -1.350e+01 | 0.0000 | 32.0 | 3.85% | 697.8 | 1.47% | motif file (matrix) |
svg |
44 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-5 | -1.276e+01 | 0.0000 | 153.0 | 18.39% | 6086.9 | 12.80% | motif file (matrix) |
svg |
45 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-5 | -1.247e+01 | 0.0000 | 41.0 | 4.93% | 1065.2 | 2.24% | motif file (matrix) |
svg |
46 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-5 | -1.214e+01 | 0.0000 | 45.0 | 5.41% | 1236.1 | 2.60% | motif file (matrix) |
svg |
47 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-5 | -1.195e+01 | 0.0000 | 49.0 | 5.89% | 1406.0 | 2.96% | motif file (matrix) |
svg |
48 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-5 | -1.166e+01 | 0.0001 | 45.0 | 5.41% | 1260.2 | 2.65% | motif file (matrix) |
svg |
49 |
| Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer | 1e-4 | -1.151e+01 | 0.0001 | 82.0 | 9.86% | 2853.4 | 6.00% | motif file (matrix) |
svg |
50 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-4 | -1.135e+01 | 0.0001 | 39.0 | 4.69% | 1040.8 | 2.19% | motif file (matrix) |
svg |
51 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-4 | -1.062e+01 | 0.0002 | 38.0 | 4.57% | 1036.9 | 2.18% | motif file (matrix) |
svg |
52 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-4 | -1.060e+01 | 0.0002 | 55.0 | 6.61% | 1734.8 | 3.65% | motif file (matrix) |
svg |
53 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-4 | -1.055e+01 | 0.0002 | 107.0 | 12.86% | 4100.4 | 8.63% | motif file (matrix) |
svg |
54 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-4 | -1.044e+01 | 0.0002 | 32.0 | 3.85% | 814.3 | 1.71% | motif file (matrix) |
svg |
55 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-4 | -1.013e+01 | 0.0003 | 73.0 | 8.77% | 2559.3 | 5.38% | motif file (matrix) |
svg |
56 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-4 | -9.835e+00 | 0.0003 | 46.0 | 5.53% | 1403.5 | 2.95% | motif file (matrix) |
svg |
57 |
| p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-3 | -9.020e+00 | 0.0008 | 23.0 | 2.76% | 540.7 | 1.14% | motif file (matrix) |
svg |
58 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-3 | -9.016e+00 | 0.0008 | 96.0 | 11.54% | 3735.3 | 7.86% | motif file (matrix) |
svg |
59 |
| AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-3 | -8.764e+00 | 0.0010 | 58.0 | 6.97% | 1996.6 | 4.20% | motif file (matrix) |
svg |
60 |
| CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.721e+00 | 0.0010 | 53.0 | 6.37% | 1778.1 | 3.74% | motif file (matrix) |
svg |
61 |
| ETS(ETS)/Promoter/Homer | 1e-3 | -8.685e+00 | 0.0010 | 21.0 | 2.52% | 482.0 | 1.01% | motif file (matrix) |
svg |
62 |
| Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer | 1e-3 | -8.595e+00 | 0.0011 | 20.0 | 2.40% | 449.4 | 0.95% | motif file (matrix) |
svg |
63 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-3 | -8.346e+00 | 0.0014 | 61.0 | 7.33% | 2166.0 | 4.56% | motif file (matrix) |
svg |
64 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-3 | -7.707e+00 | 0.0026 | 45.0 | 5.41% | 1502.2 | 3.16% | motif file (matrix) |
svg |
65 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-3 | -7.596e+00 | 0.0028 | 63.0 | 7.57% | 2323.8 | 4.89% | motif file (matrix) |
svg |
66 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-3 | -7.529e+00 | 0.0030 | 21.0 | 2.52% | 526.8 | 1.11% | motif file (matrix) |
svg |
67 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-3 | -7.457e+00 | 0.0031 | 37.0 | 4.45% | 1174.9 | 2.47% | motif file (matrix) |
svg |
68 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-3 | -7.429e+00 | 0.0032 | 29.0 | 3.49% | 843.0 | 1.77% | motif file (matrix) |
svg |
69 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.612e+00 | 0.0071 | 19.0 | 2.28% | 490.5 | 1.03% | motif file (matrix) |
svg |
70 |
| Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer | 1e-2 | -6.583e+00 | 0.0072 | 56.0 | 6.73% | 2094.2 | 4.41% | motif file (matrix) |
svg |
71 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-2 | -6.481e+00 | 0.0079 | 47.0 | 5.65% | 1689.4 | 3.55% | motif file (matrix) |
svg |
72 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-2 | -6.340e+00 | 0.0089 | 49.0 | 5.89% | 1793.9 | 3.77% | motif file (matrix) |
svg |
73 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-2 | -6.320e+00 | 0.0090 | 45.0 | 5.41% | 1612.2 | 3.39% | motif file (matrix) |
svg |
74 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -6.288e+00 | 0.0091 | 64.0 | 7.69% | 2501.4 | 5.26% | motif file (matrix) |
svg |
75 |
| p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer | 1e-2 | -6.135e+00 | 0.0105 | 6.0 | 0.72% | 74.0 | 0.16% | motif file (matrix) |
svg |
76 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.005e+00 | 0.0118 | 32.0 | 3.85% | 1058.6 | 2.23% | motif file (matrix) |
svg |
77 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-2 | -5.947e+00 | 0.0124 | 8.0 | 0.96% | 132.7 | 0.28% | motif file (matrix) |
svg |
78 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-2 | -5.941e+00 | 0.0124 | 13.0 | 1.56% | 296.0 | 0.62% | motif file (matrix) |
svg |
79 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-2 | -5.863e+00 | 0.0131 | 55.0 | 6.61% | 2119.3 | 4.46% | motif file (matrix) |
svg |
80 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.610e+00 | 0.0167 | 15.0 | 1.80% | 382.5 | 0.80% | motif file (matrix) |
svg |
81 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -5.394e+00 | 0.0204 | 184.0 | 22.12% | 8783.8 | 18.48% | motif file (matrix) |
svg |
82 |
| AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.386e+00 | 0.0204 | 41.0 | 4.93% | 1513.0 | 3.18% | motif file (matrix) |
svg |
83 |
| NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -5.298e+00 | 0.0219 | 6.0 | 0.72% | 88.6 | 0.19% | motif file (matrix) |
svg |
84 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -5.250e+00 | 0.0227 | 157.0 | 18.87% | 7380.6 | 15.53% | motif file (matrix) |
svg |
85 |
| E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.229e+00 | 0.0230 | 21.0 | 2.52% | 640.7 | 1.35% | motif file (matrix) |
svg |
86 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-2 | -5.136e+00 | 0.0249 | 40.0 | 4.81% | 1489.9 | 3.13% | motif file (matrix) |
svg |
87 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.707e+00 | 0.0378 | 26.0 | 3.12% | 890.3 | 1.87% | motif file (matrix) |
svg |
88 |
| PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-2 | -4.704e+00 | 0.0378 | 6.0 | 0.72% | 100.8 | 0.21% | motif file (matrix) |
svg |