Information for 3-TGGCTGAGTGCCAAGG (Motif 7)

A C G T A C T G A C T G G A T C C G A T A T C G C T G A A C T G A C G T A C T G A T G C A T G C G T C A C T G A A T C G C T A G
Reverse Opposite:
A G T C A T G C A G C T A C G T A T C G A T C G A G T C C G T A G T A C A G C T A T G C G C T A C T A G A G T C A G T C C G T A
p-value:1e-13
log p-value:-3.089e+01
Information Content per bp:1.806
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.3 +/- 24.3bp
Average Position of motif in Background60.3 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTGAGTGCCAAGG
TTGGCANNNTGCCAAG-
 A C G T A C G T A C T G A C T G G A T C C G A T A T C G C T G A A C T G A C G T A C T G A T G C A T G C G T C A C T G A A T C G C T A G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGGCTGAGTGCCAAGG
TGGCACCATGCCAA--
 A C G T A C T G A C T G G A T C C G A T A T C G C T G A A C T G A C G T A C T G A T G C A T G C G T C A C T G A A T C G C T A G
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGAGTGCCAAGG
CTGGCAGNCTGCCA---
 A C G T A C G T A C T G A C T G G A T C C G A T A T C G C T G A A C T G A C G T A C T G A T G C A T G C G T C A C T G A A T C G C T A G
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TGGCTGAGTGCCAAGG
------GGTGCCAAGT
 A C G T A C T G A C T G G A T C C G A T A T C G C T G A A C T G A C G T A C T G A T G C A T G C G T C A C T G A A T C G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.59
Offset:7
Orientation:forward strand
Alignment:TGGCTGAGTGCCAAGG
-------TTGCCAAG-
 A C G T A C T G A C T G G A T C C G A T A T C G C T G A A C T G A C G T A C T G A T G C A T G C G T C A C T G A A T C G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TGGCTGAGTGCCAAGG
---BTGABTGACAGS-
 A C G T A C T G A C T G G A T C C G A T A T C G C T G A A C T G A C G T A C T G A T G C A T G C G T C A C T G A A T C G C T A G
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGGCTGAGTGCCAAGG
--CTTGAGTGGCT---
 A C G T A C T G A C T G G A T C C G A T A T C G C T G A A C T G A C G T A C T G A T G C A T G C G T C A C T G A A T C G C T A G
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TGGCTGAGTGCCAAGG
GTCATGCHTGRCTGS-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G G A T C C G A T A T C G C T G A A C T G A C G T A C T G A T G C A T G C G T C A C T G A A T C G C T A G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TGGCTGAGTGCCAAGG
------CGTGCCAAG-
 A C G T A C T G A C T G G A T C C G A T A T C G C T G A A C T G A C G T A C T G A T G C A T G C G T C A C T G A A T C G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TGGCTGAGTGCCAAGG
---NTGATTGACAGN-
 A C G T A C T G A C T G G A T C C G A T A T C G C T G A A C T G A C G T A C T G A T G C A T G C G T C A C T G A A T C G C T A G
A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T