Information for 12-GGAGAGGTTT (Motif 19)

C T A G A T C G C G T A C A T G C T G A A C T G A C T G C G A T A C G T C G A T
Reverse Opposite:
G C T A G T C A G C T A G T A C A G T C A G C T G T A C A C G T A T G C G A T C
p-value:1e-9
log p-value:-2.207e+01
Information Content per bp:1.831
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif165.4
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets47.5 +/- 28.9bp
Average Position of motif in Background48.6 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GGAGAGGTTT
CTTGAGTGGCT-
 A C G T A C G T C T A G A T C G C G T A C A T G C T G A A C T G A C T G C G A T A C G T C G A T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGAGAGGTTT--
-AAGAGGATTAG
 C T A G A T C G C G T A C A T G C T G A A C T G A C T G C G A T A C G T C G A T A C G T A C G T
A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PB0117.1_Eomes_2/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGAGAGGTTT------
GCGGAGGTGTCGCCTC
 C T A G A T C G C G T A C A T G C T G A A C T G A C T G C G A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

Gfi1b/MA0483.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGAGAGGTTT
TGCTGTGATTT
 A C G T C T A G A T C G C G T A C A T G C T G A A C T G A C T G C G A T A C G T C G A T
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGAGAGGTTT
TTGAGTGSTT-
 A C G T C T A G A T C G C G T A C A T G C T G A A C T G A C T G C G A T A C G T C G A T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGAGAGGTTT
ANGNAAAGGTCA
 A C G T A C G T C T A G A T C G C G T A C A T G C T G A A C T G A C T G C G A T A C G T C G A T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGAGAGGTTT
GCAGTGATTT
 C T A G A T C G C G T A C A T G C T G A A C T G A C T G C G A T A C G T C G A T
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGAGAGGTTT
-AACAGGTGT
 C T A G A T C G C G T A C A T G C T G A A C T G A C T G C G A T A C G T C G A T
A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GGAGAGGTTT----
----TGGTTTCAGT
 C T A G A T C G C G T A C A T G C T G A A C T G A C T G C G A T A C G T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

PKNOX2/MA0783.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGAGAGGTTT--
TGACAGGTGTCA
 C T A G A T C G C G T A C A T G C T G A A C T G A C T G C G A T A C G T C G A T A C G T A C G T
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A