Information for 5-AATGGGCCTGCCT (Motif 10)

C G T A G C T A C G A T A C T G A C T G A T C G G A T C G A T C A G C T A C T G G A T C G T A C A C G T
Reverse Opposite:
C G T A C A T G C T A G A G T C C T G A C A T G C T A G A T G C G T A C G T A C G C T A C G A T A C G T
p-value:1e-11
log p-value:-2.583e+01
Information Content per bp:1.737
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif86.0
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets44.9 +/- 28.6bp
Average Position of motif in Background52.4 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AATGGGCCTGCCT-
---NNACTTGCCTT
 C G T A G C T A C G A T A C T G A C T G A T C G G A T C G A T C A G C T A C T G G A T C G T A C A C G T A C G T
A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AATGGGCCTGCCT---
-NNGGCCACGCCTTTN
 C G T A G C T A C G A T A C T G A C T G A T C G G A T C G A T C A G C T A C T G G A T C G T A C A C G T A C G T A C G T A C G T
A C G T G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

KLF13/MA0657.1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AATGGGCCTGCCT-
CAAAAAGGGGCGTGGCAT
 A C G T A C G T A C G T A C G T C G T A G C T A C G A T A C T G A C T G A T C G G A T C G A T C A G C T A C T G G A T C G T A C A C G T A C G T
G T A C G T C A G T C A G T C A C T G A C T G A C A T G C T A G A C T G C T A G G A T C T A C G A G C T C A T G C A T G G A T C G T C A G A C T

SP4/MA0685.1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AATGGGCCTGCCT--
NAAGGGGGCGTGGCTTN
 A C G T A C G T C G T A G C T A C G A T A C T G A C T G A T C G G A T C G A T C A G C T A C T G G A T C G T A C A C G T A C G T A C G T
C T G A C T G A C G T A C T A G C A T G T C A G A C T G A T C G T G A C A C T G A C G T T C A G C A T G G A T C G A C T C G A T T C G A

KLF14/MA0740.1/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AATGGGCCTGCCT
AAGGGGGCGTGGCC
 A C G T C G T A G C T A C G A T A C T G A C T G A T C G G A T C G A T C A G C T A C T G G A T C G T A C A C G T
C T G A C T G A C T A G C A T G T C A G T C A G A T C G A G T C C A T G A C G T T C A G C A T G A G T C G T A C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:AATGGGCCTGCCT
---TTGCGTGCVA
 C G T A G C T A C G A T A C T G A C T G A T C G G A T C G A T C A G C T A C T G G A T C G T A C A C G T
A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.51
Offset:7
Orientation:forward strand
Alignment:AATGGGCCTGCCT--
-------TWGTCTGV
 C G T A G C T A C G A T A C T G A C T G A T C G G A T C G A T C A G C T A C T G G A T C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.51
Offset:7
Orientation:forward strand
Alignment:AATGGGCCTGCCT--
-------CTGTCTGG
 C G T A G C T A C G A T A C T G A C T G A T C G G A T C G A T C A G C T A C T G G A T C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AATGGGCCTGCCT
RGTGGGYGTGGC-
 C G T A G C T A C G A T A C T G A C T G A T C G G A T C G A T C A G C T A C T G G A T C G T A C A C G T
C T G A T C A G C A G T C T A G A T C G A C T G G A T C C A T G A C G T C A T G A C T G A G T C A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---AATGGGCCTGCCT
GTTAATGGCC------
 A C G T A C G T A C G T C G T A G C T A C G A T A C T G A C T G A T C G G A T C G A T C A G C T A C T G G A T C G T A C A C G T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T