Information for 5-CAGGGGATTAATA (Motif 6)

A G T C G C T A C T A G C T A G A T C G T A C G G T C A C G A T A C G T G T C A C G T A G A C T G T C A
Reverse Opposite:
A C G T C G T A G C A T C A G T G T C A G C T A C A G T A G T C A T G C G A T C A G T C C G A T A C T G
p-value:1e-13
log p-value:-3.178e+01
Information Content per bp:1.668
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif17.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets57.0 +/- 23.2bp
Average Position of motif in Background57.9 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0129.1_Otx1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CAGGGGATTAATA---
AGAGGGGATTAATTTAT
 A C G T A G T C G C T A C T A G C T A G A T C G T A C G G T C A C G A T A C G T G T C A C G T A G A C T G T C A A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CAGGGGATTAATA---
TGAAGGGATTAATCATC
 A C G T A G T C G C T A C T A G C T A G A T C G T A C G G T C A C G A T A C G T G T C A C G T A G A C T G T C A A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0130.1_Otx2/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CAGGGGATTAATA---
TGTAGGGATTAATTGTC
 A C G T A G T C G C T A C T A G C T A G A T C G T A C G G T C A C G A T A C G T G T C A C G T A G A C T G T C A A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAGGGGATTAATA--
TTAGAGGGATTAACAAT
 A C G T A C G T A G T C G C T A C T A G C T A G A T C G T A C G G T C A C G A T A C G T G T C A C G T A G A C T G T C A A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CAGGGGATTAATA
---GGGATTAA--
 A G T C G C T A C T A G C T A G A T C G T A C G G T C A C G A T A C G T G T C A C G T A G A C T G T C A
A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CAGGGGATTAATA
---GGGATTANN-
 A G T C G C T A C T A G C T A G A T C G T A C G G T C A C G A T A C G T G T C A C G T A G A C T G T C A
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CAGGGGATTAATA--
TTAAGGGGATTAACTAC
 A C G T A C G T A G T C G C T A C T A G C T A G A T C G T A C G G T C A C G A T A C G T G T C A C G T A G A C T G T C A A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CAGGGGATTAATA
--VRGGATTARN-
 A G T C G C T A C T A G C T A G A T C G T A C G G T C A C G A T A C G T G T C A C G T A G A C T G T C A
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CAGGGGATTAATA
---NGGATTAA--
 A G T C G C T A C T A G C T A G A T C G T A C G G T C A C G A T A C G T G T C A C G T A G A C T G T C A
A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CAGGGGATTAATA
AAGAGGATTAG--
 A G T C G C T A C T A G C T A G A T C G T A C G G T C A C G A T A C G T G T C A C G T A G A C T G T C A
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T