Information for 6-VGMTRAATGG (Motif 4)

T A G C C A T G G T A C C G A T T C A G T C G A T C G A A C G T C T A G A C T G
Reverse Opposite:
A G T C A G T C G T C A A G C T A G C T A G T C C G T A C A T G G T A C A T C G
p-value:1e-17
log p-value:-4.054e+01
Information Content per bp:1.630
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif10.42%
Number of Background Sequences with motif1607.7
Percentage of Background Sequences with motif3.42%
Average Position of motif in Targets51.2 +/- 25.1bp
Average Position of motif in Background49.3 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:VGMTRAATGG-----
---TGATTGGCTANN
 T A G C C A T G G T A C C G A T T C A G T C G A T C G A A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-VGMTRAATGG-----
ACTATGAATGAATGAT
 A C G T T A G C C A T G G T A C C G A T T C A G T C G A T C G A A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:VGMTRAATGG--
--GTTAATGGCC
 T A G C C A T G G T A C C G A T T C A G T C G A T C G A A C G T C T A G A C T G A C G T A C G T
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:VGMTRAATGG-------
--CTGATTGGTCNATTT
 T A G C C A T G G T A C C G A T T C A G T C G A T C G A A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----VGMTRAATGG
NNTNTCATGAATGT
 A C G T A C G T A C G T A C G T T A G C C A T G G T A C C G A T T C A G T C G A T C G A A C G T C T A G A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---VGMTRAATGG----
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T T A G C C A T G G T A C C G A T T C A G T C G A T C G A A C G T C T A G A C T G A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----VGMTRAATGG----
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T T A G C C A T G G T A C C G A T T C A G T C G A T C G A A C G T C T A G A C T G A C G T A C G T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--VGMTRAATGG-----
ANCGCTAATTGGTCTNN
 A C G T A C G T T A G C C A T G G T A C C G A T T C A G T C G A T C G A A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--VGMTRAATGG-----
NTNNTTAAGTGGNTNAN
 A C G T A C G T T A G C C A T G G T A C C G A T T C A G T C G A T C G A A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

BARHL2/MA0635.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:VGMTRAATGG-
-GCTAAACGGT
 T A G C C A T G G T A C C G A T T C A G T C G A T C G A A C G T C T A G A C T G A C G T
A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T