Information for 6-CTVACTTTTAAAACAT (Motif 21)

A G T C A G C T T G C A G C T A A G T C G C A T A C G T A C G T C G A T C T G A C G T A C G T A C T G A T A G C C G T A A C G T
Reverse Opposite:
G T C A C G A T A C T G A G C T A C G T A C G T A G C T G C T A C G T A G T C A C G T A C T A G C G A T A C G T C T G A T C A G
p-value:1e-6
log p-value:-1.591e+01
Information Content per bp:1.706
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif30.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets64.1 +/- 26.2bp
Average Position of motif in Background42.3 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:CTVACTTTTAAAACAT
------TTTGAAACCG
 A G T C A G C T T G C A G C T A A G T C G C A T A C G T A C G T C G A T C T G A C G T A C G T A C T G A T A G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CTVACTTTTAAAACAT
----NATTCAAAT---
 A G T C A G C T T G C A G C T A A G T C G C A T A C G T A C G T C G A T C T G A C G T A C G T A C T G A T A G C C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTVACTTTTAAAACAT--
-TGATTGTTAACAGTTGG
 A G T C A G C T T G C A G C T A A G T C G C A T A C G T A C G T C G A T C T G A C G T A C G T A C T G A T A G C C G T A A C G T A C G T A C G T
A C G T G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTVACTTTTAAAACAT
---NCYAATAAAA---
 A G T C A G C T T G C A G C T A A G T C G C A T A C G T A C G T C G A T C T G A C G T A C G T A C T G A T A G C C G T A A C G T
A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTVACTTTTAAAACAT
---CCYMATAAAA---
 A G T C A G C T T G C A G C T A A G T C G C A T A C G T A C G T C G A T C T G A C G T A C G T A C T G A T A G C C G T A A C G T
A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTVACTTTTAAAACAT
--NGCAATTAAA----
 A G T C A G C T T G C A G C T A A G T C G C A T A C G T A C G T C G A T C T G A C G T A C G T A C T G A T A G C C G T A A C G T
A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CTVACTTTTAAAACAT-
---AAATAAGAAAAAAC
 A G T C A G C T T G C A G C T A A G T C G C A T A C G T A C G T C G A T C T G A C G T A C G T A C T G A T A G C C G T A A C G T A C G T
A C G T A C G T A C G T G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

Arid3a/MA0151.1/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CTVACTTTTAAAACAT
------ATTAAA----
 A G T C A G C T T G C A G C T A A G T C G C A T A C G T A C G T C G A T C T G A C G T A C G T A C T G A T A G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CTVACTTTTAAAACAT
----CCAATAAAAA--
 A G T C A G C T T G C A G C T A A G T C G C A T A C G T A C G T C G A T C T G A C G T A C G T A C T G A T A G C C G T A A C G T
A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CTVACTTTTAAAACAT
----CCAATAAAAA--
 A G T C A G C T T G C A G C T A A G T C G C A T A C G T A C G T C G A T C T G A C G T A C G T A C T G A T A G C C G T A A C G T
A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T