Information for 20-GATGGCCAAA (Motif 20)

A C T G C T G A A C G T A C T G A C T G A G T C A G T C G T C A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C T G A C T G G T A C A G T C C G T A A G C T A G T C
p-value:1e-7
log p-value:-1.717e+01
Information Content per bp:1.926
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif36.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets28.2 +/- 15.7bp
Average Position of motif in Background48.9 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GATGGCCAAA---
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T A C T G C T G A A C G T A C T G A C T G A G T C A G T C G T C A C G T A C G T A A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GATGGCCAAA
---TGCCAA-
 A C T G C T G A A C G T A C T G A C T G A G T C A G T C G T C A C G T A C G T A
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GATGGCCAAA
-CGTGCCAAG
 A C T G C T G A A C G T A C T G A C T G A G T C A G T C G T C A C G T A C G T A
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GATGGCCAAA
GTTAATGGCC---
 A C G T A C G T A C G T A C T G C T G A A C G T A C T G A C T G A G T C A G T C G T C A C G T A C G T A
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GATGGCCAAA
AACAGATGGC----
 A C G T A C G T A C G T A C G T A C T G C T G A A C G T A C T G A C T G A G T C A G T C G T C A C G T A C G T A
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GATGGCCAAA-
-GGTGCCAAGT
 A C T G C T G A A C G T A C T G A C T G A G T C A G T C G T C A C G T A C G T A A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

CEBPA/MA0102.3/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GATGGCCAAA--
-ATTGCACAATA
 A C T G C T G A A C G T A C T G A C T G A G T C A G T C G T C A C G T A C G T A A C G T A C G T
A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GATGGCCAAA-
-ATTGCGCAAC
 A C T G C T G A A C G T A C T G A C T G A G T C A G T C G T C A C G T A C G T A A C G T
A C G T T G C A A G C T A C G T C T A G G A T C C T A G G A T C G T C A C T G A A G T C

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GATGGCCAAA---
---AGCCAATCGG
 A C T G C T G A A C G T A C T G A C T G A G T C A G T C G T C A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GATGGCCAAA--
--TGACCTARTT
 A C T G C T G A A C G T A C T G A C T G A G T C A G T C G T C A C G T A C G T A A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T