Information for 2-GCAGACATTCTGC (Motif 2)

A C T G A G T C C G T A C T A G C G T A G T A C T G C A A G C T A C G T G T A C C G A T A T C G A T G C
Reverse Opposite:
A T C G A T G C C G T A A C T G G T C A C T G A A C G T A C T G A C G T A G T C C G A T C T A G G T A C
p-value:1e-15
log p-value:-3.675e+01
Information Content per bp:1.782
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets38.6 +/- 25.1bp
Average Position of motif in Background48.1 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCAGACATTCTGC
CCAGACRSVB---
 A C T G A G T C C G T A C T A G C G T A G T A C T G C A A G C T A C G T G T A C C G A T A T C G A T G C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAGACATTCTGC
CCAGACAG-----
 A C T G A G T C C G T A C T A G C G T A G T A C T G C A A G C T A C G T G T A C C G A T A T C G A T G C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAGACATTCTGC
BCAGACWA-----
 A C T G A G T C C G T A C T A G C G T A G T A C T G C A A G C T A C G T G T A C C G A T A T C G A T G C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCAGACATTCTGC
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C T A G C G T A G T A C T G C A A G C T A C G T G T A C C G A T A T C G A T G C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCAGACATTCTGC
GCNGCCATCTTG-
 A C T G A G T C C G T A C T A G C G T A G T A C T G C A A G C T A C G T G T A C C G A T A T C G A T G C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GCAGACATTCTGC-
----ACATCCTGNT
 A C T G A G T C C G T A C T A G C G T A G T A C T G C A A G C T A C G T G T A C C G A T A T C G A T G C A C G T
A C G T A C G T A C G T A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T

TEAD4/MA0809.1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GCAGACATTCTGC
---CACATTCCAT
 A C T G A G T C C G T A C T A G C G T A G T A C T G C A A G C T A C G T G T A C C G A T A T C G A T G C
A C G T A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCAGACATTCTGC
GCCGCCATCTTG-
 A C T G A G T C C G T A C T A G C G T A G T A C T G C A A G C T A C G T G T A C C G A T A T C G A T G C
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

TEAD1/MA0090.2/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GCAGACATTCTGC
---CACATTCCAT
 A C T G A G T C C G T A C T A G C G T A G T A C T G C A A G C T A C G T G T A C C G A T A T C G A T G C
A C G T A C G T A C G T G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCAGACATTCTGC
GCAGTGATTT---
 A C T G A G T C C G T A C T A G C G T A G T A C T G C A A G C T A C G T G T A C C G A T A T C G A T G C
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T