Information for 6-GTTGGCTTTG (Motif 6)

A C T G A C G T A C G T A C T G C T A G A G T C A C G T A C G T A C G T C T A G
Reverse Opposite:
A G T C G T C A T G C A C G T A A C T G G A T C A G T C G T C A G T C A T G A C
p-value:1e-10
log p-value:-2.336e+01
Information Content per bp:1.844
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif86.7
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets54.9 +/- 31.3bp
Average Position of motif in Background52.5 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GTTGGCTTTG
-TTGACTTTT
 A C T G A C G T A C G T A C T G C T A G A G T C A C G T A C G T A C G T C T A G
A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTTGGCTTTG
BNTGDCCTTG
 A C T G A C G T A C G T A C T G C T A G A G T C A C G T A C G T A C G T C T A G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GTTGGCTTTG--
--TGACCTTGAN
 A C T G A C G T A C G T A C T G C T A G A G T C A C G T A C G T A C G T C T A G A C G T A C G T
A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GTTGGCTTTG--
--TGACCTTGAV
 A C T G A C G T A C G T A C T G C T A G A G T C A C G T A C G T A C G T C T A G A C G T A C G T
A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTTGGCTTTG-----
GCTGACCTTGAACTN
 A C T G A C G T A C G T A C T G C T A G A G T C A C G T A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTTGGCTTTG
NTTGGCANN-
 A C T G A C G T A C G T A C T G C T A G A G T C A C G T A C G T A C G T C T A G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTTGGCTTTG---
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G C T A G A G T C A C G T A C G T A C G T C T A G A C G T A C G T A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTTGGCTTTG
-TTGGCA---
 A C T G A C G T A C G T A C T G C T A G A G T C A C G T A C G T A C G T C T A G
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GTTGGCTTTG---
NNATTGGACTTTNGNN
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G C T A G A G T C A C G T A C G T A C G T C T A G A C G T A C G T A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTGGCTTTG------
-TGGACTTTGNNCTCN
 A C T G A C G T A C G T A C T G C T A G A G T C A C G T A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T