Information for 3-AGCCTTTCTCTGACCA (Motif 4)

C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A G C T A G T C C G A T A C T G C G T A A T G C A G T C C G T A
Reverse Opposite:
C G A T A C T G A T C G A C G T A G T C C G T A A C T G C T G A T A C G G T C A C G T A C G T A A C T G C T A G A G T C A C G T
p-value:1e-13
log p-value:-3.092e+01
Information Content per bp:1.916
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.5 +/- 22.6bp
Average Position of motif in Background43.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGCCTTTCTCTGACCA
--ACTTTCACTTTC--
 C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A G C T A G T C C G A T A C T G C G T A A T G C A G T C C G T A
A C G T A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGCCTTTCTCTGACCA
ANTCCTTTGTCTNNNN-
 A C G T C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A G C T A G T C C G A T A C T G C G T A A T G C A G T C C G T A
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGCCTTTCTCTGACCA
TGACCTTTANTTGACCT
 A C G T C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A G C T A G T C C G A T A C T G C G T A A T G C A G T C C G T A
G A C T C T A G T G C A T G A C A G T C G A C T A G C T G C A T T C G A A C T G C A G T A G C T A T C G C T G A G T A C A T G C A G C T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGCCTTTCTCTGACCA
TGACCTTTGCATGACCT
 A C G T C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A G C T A G T C C G A T A C T G C G T A A T G C A G T C C G T A
G A C T T A C G T G C A T G A C G T A C A G C T A G C T G C A T T C A G T A G C C T G A A C G T C T A G T G C A T G A C G T A C A G C T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGCCTTTCTCTGACCA
TGACCTCTCNNTGACCT
 A C G T C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A G C T A G T C C G A T A C T G C G T A A T G C A G T C C G T A
G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGCCTTTCTCTGACCA
BTGACCTCTNNHTGACCY
 A C G T A C G T C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A G C T A G T C C G A T A C T G C G T A A T G C A G T C C G T A
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---AGCCTTTCTCTGACCA
NNGCACCTTTCTCC-----
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A G C T A G T C C G A T A C T G C G T A A T G C A G T C C G T A
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGCCTTTCTCTGACCA
--CCTTTGTTTT----
 C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A G C T A G T C C G A T A C T G C G T A A T G C A G T C C G T A
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:AGCCTTTCTCTGACCA
----------TGACCT
 C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A G C T A G T C C G A T A C T G C G T A A T G C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:AGCCTTTCTCTGACCA
-GSCTGTCACTCA---
 C G T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C A G C T A G T C C G A T A C T G C G T A A T G C A G T C C G T A
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T