Information for 13-AAGATTATCG (Motif 18)

G T C A C G T A T A C G C G T A A C G T A G C T T G C A C G A T A T G C T A C G
Reverse Opposite:
A T G C T A C G G C T A A C G T T C G A G T C A C G A T A T G C G C A T A C G T
p-value:1e-6
log p-value:-1.512e+01
Information Content per bp:1.694
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.38%
Number of Background Sequences with motif527.8
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets54.2 +/- 26.5bp
Average Position of motif in Background51.0 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------AAGATTATCG
NNTNNCAATATTAG--
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A T A C G C G T A A C G T A G C T T G C A C G A T A T G C T A C G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------AAGATTATCG
NNTNNCAATATTAG--
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A T A C G C G T A A C G T A G C T T G C A C G A T A T G C T A C G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AAGATTATCG
NGGATTAA--
 G T C A C G T A T A C G C G T A A C G T A G C T T G C A C G A T A T G C T A C G
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAGATTATCG
RGGATTAR--
 G T C A C G T A T A C G C G T A A C G T A G C T T G C A C G A T A T G C T A C G
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAGATTATCG
VRGGATTARN-
 A C G T G T C A C G T A T A C G C G T A A C G T A G C T T G C A C G A T A T G C T A C G
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAGATTATCG
CAAGCTT----
 A C G T G T C A C G T A T A C G C G T A A C G T A G C T T G C A C G A T A T G C T A C G
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AAGATTATCG
-GGATTAGC-
 G T C A C G T A T A C G C G T A A C G T A G C T T G C A C G A T A T G C T A C G
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGATTATCG-----
AGTATTCTCGGTTGC
 G T C A C G T A T A C G C G T A A C G T A G C T T G C A C G A T A T G C T A C G A C G T A C G T A C G T A C G T A C G T
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C

PB0175.1_Sox4_2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AAGATTATCG----
GGAAAAATTGTTAGGAA
 A C G T A C G T A C G T G T C A C G T A T A C G C G T A A C G T A G C T T G C A C G A T A T G C T A C G A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGATTATCG----
AAAATTGTTATGAA
 G T C A C G T A T A C G C G T A A C G T A G C T T G C A C G A T A T G C T A C G A C G T A C G T A C G T A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A