Information for 12-CAGAGTCCCGGAA (Motif 9)

T A G C C T G A T A C G C G T A A C T G C A G T A G T C A G T C G A T C A C T G A C T G T C G A C T G A
Reverse Opposite:
A G C T A C G T A G T C G T A C C T A G C T A G C T A G G C T A A G T C A C G T A G T C A G C T A T C G
p-value:1e-10
log p-value:-2.529e+01
Information Content per bp:1.781
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif71.4
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets58.2 +/- 24.7bp
Average Position of motif in Background50.9 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CAGAGTCCCGGAA-
----TTCCNGGAAG
 T A G C C T G A T A C G C G T A A C T G C A G T A G T C A G T C G A T C A C T G A C T G T C G A C T G A A C G T
A C G T A C G T A C G T A C G T G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G

STAT1/MA0137.3/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CAGAGTCCCGGAA-
---TTTCCTGGAAA
 T A G C C T G A T A C G C G T A A C T G C A G T A G T C A G T C G A T C A C T G A C T G T C G A C T G A A C G T
A C G T A C G T A C G T G A C T A C G T A G C T G T A C A G T C G A C T C T A G A C T G T G C A C T G A T G C A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CAGAGTCCCGGAA
CANAGNNCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A C G C G T A A C T G C A G T A G T C A G T C G A T C A C T G A C T G T C G A C T G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CAGAGTCCCGGAA
AGAGTCCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A C G C G T A A C T G C A G T A G T C A G T C G A T C A C T G A C T G T C G A C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CAGAGTCCCGGAA---
------RCCGGAARYN
 T A G C C T G A T A C G C G T A A C T G C A G T A G T C A G T C G A T C A C T G A C T G T C G A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G A C C T A G C A T G G C T A G C T A T C A G G A C T C T A G

Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CAGAGTCCCGGAA---
------RCCGGAAGTD
 T A G C C T G A T A C G C G T A A C T G C A G T A G T C A G T C G A T C A C T G A C T G T C G A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T A G C T G A C T A C G T C A G G C T A G C T A T C A G A G C T C T A G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CAGAGTCCCGGAA
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T T A G C C T G A T A C G C G T A A C T G C A G T A G T C A G T C G A T C A C T G A C T G T C G A C T G A
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAGAGTCCCGGAA
---AGGCCTNG--
 T A G C C T G A T A C G C G T A A C T G C A G T A G T C A G T C G A T C A C T G A C T G T C G A C T G A
A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CAGAGTCCCGGAA-
---TTTCCCAGAAN
 T A G C C T G A T A C G C G T A A C T G C A G T A G T C A G T C G A T C A C T G A C T G T C G A C T G A A C G T
A C G T A C G T A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CAGAGTCCCGGAA---
--NCTTCCNGGAAGNN
 T A G C C T G A T A C G C G T A A C T G C A G T A G T C A G T C G A T C A C T G A C T G T C G A C T G A A C G T A C G T A C G T
A C G T A C G T T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G