Information for 9-GRCRCCCTMYAGT (Motif 6)

A C T G C T G A G T A C C T A G A G T C A G T C A G T C A G C T G T A C A G C T C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T C T G A A C T G C T G A A C T G A C T G C T A G G A T C A C T G A G C T A G T C
p-value:1e-11
log p-value:-2.647e+01
Information Content per bp:1.860
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 16.6bp
Average Position of motif in Background31.3 +/- 8.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0025.1_Glis2_1/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GRCRCCCTMYAGT
TATCGACCCCCCACAG-
 A C G T A C G T A C G T A C G T A C T G C T G A G T A C C T A G A G T C A G T C A G T C A G C T G T A C A G C T C G T A A C T G A C G T
G A C T G C T A G C A T T A G C A C T G T G C A A G T C A G T C G A T C G A T C G A T C G A T C T G C A A G T C C T G A C A T G A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GRCRCCCTMYAGT--
GACCCCCCGCTGTGC
 A C T G C T G A G T A C C T A G A G T C A G T C A G T C A G C T G T A C A G C T C G T A A C T G A C G T A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GRCRCCCTMYAGT-
GACCCCCCGCTGTG
 A C T G C T G A G T A C C T A G A G T C A G T C A G T C A G C T G T A C A G C T C G T A A C T G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

PB0052.1_Plagl1_1/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GRCRCCCTMYAGT
NNNGGGGCGCCCCCNN--
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A G T A C C T A G A G T C A G T C A G T C A G C T G T A C A G C T C G T A A C T G A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GRCRCCCTMYAGT-----
TAGCGCCCCCTGGTGGCCA
 A C G T A C T G C T G A G T A C C T A G A G T C A G T C A G T C A G C T G T A C A G C T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GRCRCCCTMYAGT---
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C T G C T G A G T A C C T A G A G T C A G T C A G T C A G C T G T A C A G C T C G T A A C T G A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GRCRCCCTMYAGT-----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C T G C T G A G T A C C T A G A G T C A G T C A G T C A G C T G T A C A G C T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GRCRCCCTMYAGT
GGCGCGCT-----
 A C T G C T G A G T A C C T A G A G T C A G T C A G T C A G C T G T A C A G C T C G T A A C T G A C G T
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GRCRCCCTMYAGT--
GACCCCCCGCTGCGC
 A C T G C T G A G T A C C T A G A G T C A G T C A G T C A G C T G T A C A G C T C G T A A C T G A C G T A C G T A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

PB0143.1_Klf7_2/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----GRCRCCCTMYAGT
AAGCATACGCCCAACTT-
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A G T A C C T A G A G T C A G T C A G T C A G C T G T A C A G C T C G T A A C T G A C G T
T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T A C G T