Information for 7-GAAAGATTAACGA (Motif 9)

A C T G C T G A C G T A C G T A C A T G C T G A A C G T A C G T C G T A C G T A A G T C A T C G C T G A
Reverse Opposite:
A G C T A T G C C T A G A C G T A C G T C G T A C G T A A G C T G A T C A C G T A C G T A G C T A G T C
p-value:1e-10
log p-value:-2.462e+01
Information Content per bp:1.851
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets82.4 +/- 10.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GAAAGATTAACGA
GGTTAAACATTAA---
 A C G T A C G T A C G T A C T G C T G A C G T A C G T A C A T G C T G A A C G T A C G T C G T A C G T A A G T C A T C G C T G A
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A A C G T A C G T A C G T

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAAAGATTAACGA
TTAATNATTAAC--
 A C G T A C T G C T G A C G T A C G T A C A T G C T G A A C G T A C G T C G T A C G T A A G T C A T C G C T G A
A C G T G A C T T C G A G T C A G C A T T A G C C G T A C A G T A G C T C G T A T G C A G A T C A C G T A C G T

HNF1A/MA0046.2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GAAAGATTAACGA
AGTTAATGATTAACT-
 A C G T A C G T A C G T A C T G C T G A C G T A C G T A C A T G C T G A A C G T A C G T C G T A C G T A A G T C A T C G C T G A
C T G A C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C G T A T C G A G T A C G C A T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAAAGATTAACGA
-VRGGATTARN--
 A C T G C T G A C G T A C G T A C A T G C T G A A C G T A C G T C G T A C G T A A G T C A T C G C T G A
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

HNF1B/MA0153.2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAAAGATTAACGA
GTTAATNATTAAC--
 A C G T A C G T A C T G C T G A C G T A C G T A C A T G C T G A A C G T A C G T C G T A C G T A A G T C A T C G C T G A
C T A G A G C T G A C T C T G A G T C A G C A T A T G C C G T A C A G T G A C T C G T A T C G A G T A C A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GAAAGATTAACGA--
---ANTTTTACGACC
 A C T G C T G A C G T A C G T A C A T G C T G A A C G T A C G T C G T A C G T A A G T C A T C G C T G A A C G T A C G T
A C G T A C G T A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

PH0073.1_Hoxc9/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GAAAGATTAACGA-----
--NNAATTAATGACCNNN
 A C T G C T G A C G T A C G T A C A T G C T G A A C G T A C G T C G T A C G T A A G T C A T C G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GAAAGATTAACGA
--NGGATTAA---
 A C T G C T G A C G T A C G T A C A T G C T G A A C G T A C G T C G T A C G T A A G T C A T C G C T G A
A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

POU4F2/MA0683.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAAAGATTAACGA-
ATGCATAATTAATGAG
 A C G T A C G T A C T G C T G A C G T A C G T A C A T G C T G A A C G T A C G T C G T A C G T A A G T C A T C G C T G A A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAAAGATTAACGA-
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C T G C T G A C G T A C G T A C A T G C T G A A C G T A C G T C G T A C G T A A G T C A T C G C T G A A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T